add ambient RNA analysis
add singularity helper scripts
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- analysis/about.Rmd 32 additions, 1 deletionanalysis/about.Rmd
- analysis/index.Rmd 28 additions, 21 deletionsanalysis/index.Rmd
- analysis/scRNAseq_complete_00-1_swappedDrops.Rmd 52 additions, 13 deletionsanalysis/scRNAseq_complete_00-1_swappedDrops.Rmd
- analysis/scRNAseq_complete_00-3_comparison.Rmd 229 additions, 0 deletionsanalysis/scRNAseq_complete_00-3_comparison.Rmd
- analysis/scRNAseq_complete_00_ambient_RNA.Rmd 69 additions, 35 deletionsanalysis/scRNAseq_complete_00_ambient_RNA.Rmd
- code/R_singularity_run_helper.R 6 additions, 0 deletionscode/R_singularity_run_helper.R
- code/singR.sh 2 additions, 0 deletionscode/singR.sh
- public/about.html 294 additions, 67 deletionspublic/about.html
- public/description_sce.html 1082 additions, 0 deletionspublic/description_sce.html
- public/figure/scRNAseq_complete_00-1_swappedDrops.Rmd/swappedDrops_24793-1.jpeg 0 additions, 0 deletions..._complete_00-1_swappedDrops.Rmd/swappedDrops_24793-1.jpeg
- public/figure/scRNAseq_complete_00-1_swappedDrops.Rmd/swappedDrops_24793-2.jpeg 0 additions, 0 deletions..._complete_00-1_swappedDrops.Rmd/swappedDrops_24793-2.jpeg
- public/figure/scRNAseq_complete_00-3_comparison.Rmd/unnamed-chunk-3-1.jpeg 0 additions, 0 deletions...NAseq_complete_00-3_comparison.Rmd/unnamed-chunk-3-1.jpeg
- public/figure/scRNAseq_complete_00-3_comparison.Rmd/unnamed-chunk-3-2.jpeg 0 additions, 0 deletions...NAseq_complete_00-3_comparison.Rmd/unnamed-chunk-3-2.jpeg
- public/figure/scRNAseq_complete_00-3_comparison.Rmd/unnamed-chunk-4-1.jpeg 0 additions, 0 deletions...NAseq_complete_00-3_comparison.Rmd/unnamed-chunk-4-1.jpeg
- public/figure/scRNAseq_complete_00-3_comparison.Rmd/unnamed-chunk-4-2.jpeg 0 additions, 0 deletions...NAseq_complete_00-3_comparison.Rmd/unnamed-chunk-4-2.jpeg
- public/figure/scRNAseq_complete_00-3_comparison.Rmd/unnamed-chunk-4-3.jpeg 0 additions, 0 deletions...NAseq_complete_00-3_comparison.Rmd/unnamed-chunk-4-3.jpeg
- public/figure/scRNAseq_complete_00-3_comparison.Rmd/unnamed-chunk-5-1.jpeg 0 additions, 0 deletions...NAseq_complete_00-3_comparison.Rmd/unnamed-chunk-5-1.jpeg
- public/figure/scRNAseq_complete_00-3_comparison.Rmd/unnamed-chunk-6-1.jpeg 0 additions, 0 deletions...NAseq_complete_00-3_comparison.Rmd/unnamed-chunk-6-1.jpeg
- public/figure/scRNAseq_complete_00-3_comparison.Rmd/unnamed-chunk-6-10.jpeg 0 additions, 0 deletions...Aseq_complete_00-3_comparison.Rmd/unnamed-chunk-6-10.jpeg
- public/figure/scRNAseq_complete_00-3_comparison.Rmd/unnamed-chunk-6-11.jpeg 0 additions, 0 deletions...Aseq_complete_00-3_comparison.Rmd/unnamed-chunk-6-11.jpeg
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