Skip to content
Snippets Groups Projects
Select Git revision
  • master default protected
1 result
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.02Sep131Aug29261Jun31May30247Apr6517Mar161514Increase num permmastermasterPlot zscores, consolidated; increase number of randomizationsAdd zscores/summits at different resolutionsOn regioneR TollerveyUpdate genomic comparments precedence; plot peak height differently; add extra motif analysisAdd coverage profiling by biotype; and genomation-like Tollervey plotsAdd genomic compartment barplotsAdd motifs analysisPanels from fig 5Add Tollervey 2011 and Polymenidou 2011 liftovered tracksAdd runnable, releasable track (available at https://genome.ucsc.edu/s/imallona/hg38_malat1_manu_clip)On generating tracks to visually inspect data; on streme motif searches stratified in several waysOn Markov chains and getting back dreme/streme, as the dusting removed the GTsSketch seqlogos analysis / not runnableArchiving; will use what Kathi did, no updatesContinue Kathi's analysis; add some MEME scansAdd nf-core/clipseq analysisChange to be able to knit the gencode versionUpdate the Snakefile so it generates the 5ntclipped, R2-only STAR mappings and clipper callsAdd Kathi's postprocessingAdd clipper AS fileAdd ruleorder and few changes to be runnable (till the clkipper_peaks.bed, probably paired-end)The multiQC step raised an error; modify to generate one of the clip runs (untested)Project start, forked from khembach Manu_TDP_clip