updated all csv tables

webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Mouse_list_CLS_2023_November.csv

+Subject_ID,Date,Preparation,Contrast_agent_Injection_location,Comments,Stereotactic_coordinates_used_previously_at,Stereotactic_coordinate_X_(Lateral-Medial),Stereotactic_coordinate_Y_(Posterior-Anterior),Stereotactic_coordinate_Z_(Ventral-Dorsal),Sex,Body_weight,Date_of_birth,Strain,Genetic_strain_type,Pathology,Infusion_cannula_length,Contrast_agent_concentration,Contrast_agent_infusion_rate,Contrast_agent_maintenance_infusion_rate,Contrast_agent_infusion_volume,Contrast_agent_infusion_start_time,Contrast_agent_infusion_started_before_scan_name,Anesthesia_induction,Anesthesia_maintenance,Analgesia,Artificial_ventilation,Research_group_institution,Research_group,Table_date_csv_export
+subjCA019,2023-11-26,in vivo,right lateral ventricle,,CLS,-1.2,0.03,-2.3,Male,28.5,2023-08-22,C57BL/6,wild-type,healthy,2.3 mm,320 mg Ba/ml,0.25 µl/min,0.02 µl/min,5 µl,20:44,scan002_time-steps\time-steps_002,"Ketamin (50 mg/kg), Medetomidine (1 mg/kg)",isoflurane (1-2%),Buprenorphine (0.1 mg/kg),tracheotomy,Unibas & Unibe & UZH,BMC & TKI & TIG,04/09/2024

webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Mouse_list_CLS_November_2023.csv

-SubjectID,University,Research_group,Year,Month,Date_acquisition,Data_type,Dataproject_ID,Facility_proposal_ID,Facility_institution,Facility_country,Facility_name,Facility_sub
-subjCA019,UZH,The Interface Group,2023,November,26/11/2023,synchrotron_microCT,in vivo CSF,38G13327,,Canada,CLS,BMIT
-,,,,,,,,,,,,

webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Mouse_list_CLS_November_2023_codebook.csv

-SubjectID,Mice unique identifier
-University,"University affiliation of the group who collected the data (e.g., UZH; see glossary)"
-Research_group,"Abbreviation describing the group who collected the data (e.g., TIG; see glossary)"
-Year,Year of collection YYYY
-Month,"Month of collection (Jan, Feb, Mar, etc)"
-Date_acquisition,DD/MM/YYYY
-Data_type,"Abbreviation describing the type of data collected (e.g., SRæCT; see glossary)"
-Dataproject_ID,"(optional) Identifier of the project from which the data package derives, e.g., In Vivo CSF"
-Facility_proposal_ID,"(optional) Number of the proposal for facility usage e.g., the beamline numbers"
-Facility_institution,Name or acronym of the institution hosting the main facility (it can be the same as University)
-Facility_country,Country where the facility is located
-Facility_name,"Name or acronym of the main facility (e.g., CLS, SPring-8,etc)"
-Facility_sub,"(optional) Additional facility information (e.g., beamline)"

webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Scan_list_CLS_2023_November.csv

+Preview_Image,Preview_Image_Slice_Number,Date,Subject_ID,Tissue_ID,Anatomical_location,Filename,Filename_changes,Number_of_subscans,Comments,Preparation,Strain,Genetic_strain_type,Pathology,Tomography_acquisition_scheme,Tomography_scan_type,Repository,Repository_URL,Mean_photon_energy,Monochromator,Effective_voxel_size,Projections_width_in_pixel,Projections_height_in_pixel,Field_of_View_width,Field_of_View_height,Exposure_time,Overhead_time_per_projection,Number_of_projections,Stage_rotation_angle_range,Stage_position_z,Propagation_distance,Detector_model,Detector_pixel_size,Detector_width_in_pixel,Detector_height_in_pixel,Lens_type,Lens_F-number,Lens_numerical_aperture,Scintillator,Radiation_dose_rate,Facility_name,Facility_subunit,Facility_institution,Facility_country,Beamtime_start_date_YYYY_MM_DD,Beamtime_proposal_number,Beamtime_project_description,Disk_ID_Projections,Disk_ID_Reconstructions,Disk_Basel_Physical_Location,Disk_Bern_Physical_Location,Disk_Zurich_Physical_Location,Research_group_institution,Research_group,Table_date_csv_export
+,490,2023-11-26,subjCA019,N/A,brain,scan002_time-steps,N/A,50,,in vivo,C57BL/6,wild-type,healthy,half-acquisition tomography,time series,Zenodo,,37.8 keV,Double crystal monochromator,8 µm,2048,1200,16.4 mm,9.6 mm,15 ms,2 ms,2000,180 °,N/A,600 mm,pco.edge 5.5,6.5 µm,2560,2160,Macro lens,N/A,N/A,N/A,2 Gy/s,CLS,BMIT,University of Saskatchewan,Canada,21/11/2023,38G13327,CSF time-resolved,CLS_Nov2023_Disk1,CLS_Nov2023_Disk3,laboratory cupboard,office cupboard,office cupboard,Unibas & Unibe & UZH,BMC & TKI & TIG,

webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Scan_list_CLS_November_2023.csv

-SubjectID,University,Research_group,Year,Month,Date_acquisition,Data_type,Dataproject_ID,Facility_proposal_ID,Facility_institution,Facility_country,Facility_name,Facility_sub
-subjCA019,UZH,The Interface Group,2023,November,26/11/2023,SRCT,in vivo CSF,38G13327,,Canada,CLS,BMIT
-,,,,,,,,,,,,

webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Scan_list_CLS_November_2023_codebook.csv

-SubjectID,Mice unique identifier
-University,"University affiliation of the group who collected the data (e.g., UZH; see glossary)"
-Research_group,"Abbreviation describing the group who collected the data (e.g., TIG; see glossary)"
-Year,Year of collection YYYY
-Month,"Month of collection (Jan, Feb, Mar, etc)"
-Date_acquisition,DD/MM/YYYY
-Data_type,"Abbreviation describing the type of data collected (e.g., SRæCT; see glossary)"
-Dataproject_ID,"(optional) Identifier of the project from which the data package derives, e.g., In Vivo CSF"
-Facility_proposal_ID,"(optional) Number of the proposal for facility usage e.g., the beamline numbers"
-Facility_institution,Name or acronym of the institution hosting the main facility (it can be the same as University)
-Facility_country,Country where the facility is located
-Facility_name,"Name or acronym of the main facility (e.g., CLS, SPring-8,etc)"
-Facility_sub,"(optional) Additional facility information (e.g., beamline)"

webpage_contents/experiments/synchrotron_microCT/ESRF_2021_November/metadata_tables/Mouse_list_ESRF_2021_November.csv

+Subject_ID,Date,Preparation,Contrast_agent_Injection_location,Comments,Stereotactic_coordinates_used_previously_at,Stereotactic_coordinate_X_(Lateral-Medial),Stereotactic_coordinate_Y_(Posterior-Anterior),Stereotactic_coordinate_Z_(Ventral-Dorsal),Sex,Body_weight,Date_of_birth,Strain,Genetic_strain_type,Pathology,Infusion_cannula_length,Contrast_agent_concentration,Contrast_agent_infusion_rate,Contrast_agent_maintenance_infusion_rate,Contrast_agent_infusion_volume,Contrast_agent_infusion_start_time,Contrast_agent_infusion_started_before_scan_name,Anesthesia_induction,Anesthesia_maintenance,Analgesia,Artificial_ventilation,Research_group_institution,Research_group,Table_date_csv_export
+Mouse17,2021-11-19,in vivo,right lateral ventricle,,TKI,-0.95,0.22,-2.5,Male,23.7,Unavailable,C57BL/6,wild-type,healthy,2.5 mm,320 mg Ba/ml,0.5 µl/min,0 µl/min,5 µl,2:48,Mouse17_male_live_23p7_0p5ulmin_5ul_60k360_h2,"ketamine 73 mg/kg,medetomidine 0.18 mg/kg","Ketamine (73 mg/kg),Medetomidine (0.18 mg/kg)",Buprenorphine (0.1 mg/kg),free breathing,Unibas & Unibe & UZH,BMC & TKI & TIG,04/09/2024
+Mouse19,2021-11-19,in vivo,no contrast agent,Control mouse without contrast agent infusion,TKI,-0.95,0.22,-2.5,Male,26.9,Unavailable,C57BL/6,wild-type,healthy,N/A,N/A,N/A,0 µl/min,N/A,N/A,N/A,"ketamine 73 mg/kg,medetomidine 0.18 mg/kg","Ketamine (73 mg/kg),Medetomidine (0.18 mg/kg)",Buprenorphine (0.1 mg/kg),tracheotomy,Unibas & Unibe & UZH,BMC & TKI & TIG,
+Mouse21,2021-11-20,in vivo,right lateral ventricle,,TKI,-0.95,0.22,-2.5,Male,25.3,Unavailable,C57BL/6,wild-type,healthy,2.5 mm,320 mg Ba/ml,0.1 µl/min,0 µl/min,6 µl,13:04,Mouse21_male_live_25p3_0p1ulmin_Xul_2k_h1p5_s1,"ketamine 73 mg/kg,medetomidine 0.18 mg/kg","Ketamine (73 mg/kg),Medetomidine (0.18 mg/kg)",Buprenorphine (0.1 mg/kg),tracheotomy,Unibas & Unibe & UZH,BMC & TKI & TIG,

webpage_contents/experiments/synchrotron_microCT/ESRF_2021_November/metadata_tables/Scan_list_ESRF_2021_November.csv

+Preview_Image,Preview_Image_Slice_Number,Date,Subject_ID,Tissue_ID,Anatomical_location,Filename,Filename_changes,Number_of_subscans,Comments,Preparation,Strain,Genetic_strain_type,Pathology,Tomography_acquisition_scheme,Tomography_scan_type,Repository,Repository_URL,Mean_photon_energy,Monochromator,Effective_voxel_size,Projections_width_in_pixel,Projections_height_in_pixel,Field_of_View_width,Field_of_View_height,Exposure_time,Overhead_time_per_projection,Number_of_projections,Stage_rotation_angle_range,Stage_position_z,Propagation_distance,Detector_model,Detector_pixel_size,Detector_width_in_pixel,Detector_height_in_pixel,Lens_type,Lens_F-number,Lens_numerical_aperture,Scintillator,Radiation_dose_rate,Facility_name,Facility_subunit,Facility_institution,Facility_country,Beamtime_start_date_YYYY_MM_DD,Beamtime_proposal_number,Beamtime_project_description,Disk_ID_Projections,Disk_ID_Reconstructions,Disk_Basel_Physical_Location,Disk_Bern_Physical_Location,Disk_Zurich_Physical_Location,Research_group_institution,Research_group,Table_date_csv_export
+,408,2021-11-19,Mouse17,N/A,brain,Mouse17_male_live_23p7_0p5ulmin_5ul_2k_h2_rec__0408,N/A,1,,in vivo,C57BL/6,wild-type,healthy,standard tomography,height steps,Zenodo,,37.95,Double crystal monochromator,6.3 µm,2560,778,16.1 mm,4.9 mm,5 ms,5 ms,60000,360 °,N/A,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Medium lens,100,2.2,250 µm LuAG,3.4 Gy/s,ESRF,ID17,ESRF,France,18/11/2021,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,office cupboard,Unibas & Unibe & UZH,BMC & TKI & TIG,04/09/2024
+,408,2021-11-19,Mouse17,N/A,brain,Mouse17_male_live_23p7_0p5ulmin_5ul_60k360_h2,N/A,1,20 reconstructed time delays,in vivo,C57BL/6,wild-type,healthy,standard tomography,gated scan,Zenodo,,37.95,Double crystal monochromator,6.3 µm,2560,778,16.1 mm,4.9 mm,5 ms,5 ms,60000,360 °,N/A,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Medium lens,100,2.2,250 µm LuAG,3.4 Gy/s,ESRF,ID17,ESRF,France,18/11/2021,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,office cupboard,Unibas & Unibe & UZH,BMC & TKI & TIG,
+,536,2021-11-19,Mouse19,N/A,brain ,Mouse19_male_live_26p9_noCA_2k_h1,N/A,1,2 reconstructed delta/beta,in vivo,C57BL/6,wild-type,healthy,standard tomography,height steps,Zenodo,,37.95,Double crystal monochromator,6.3 µm,2560,778,16.1 mm,4.9 mm,5 ms,5 ms,2000,360 °,N/A,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Medium lens,100,2.2,250 µm LuAG,3.4 Gy/s,ESRF,ID17,ESRF,France,18/11/2021,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,ESRF_MD1230_disk2,laboratory cupboard,office cupboard,office cupboard,Unibas & Unibe & UZH,BMC & TKI & TIG,
+,525,2021-11-20,Mouse21,N/A,brain,Mouse21_male_live_25p3_0p1ulmin_Xul_2k_h2,N/A,1,,in vivo,C57BL/6,wild-type,healthy,standard tomography,height steps,Zenodo,,37.95,Double crystal monochromator,6.3 µm,2560,778,16.1 mm,4.9 mm,5 ms,5 ms,2000,360 °,N/A,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Medium lens,100,2.2,250 µm LuAG,3.4 Gy/s,ESRF,ID17,ESRF,France,18/11/2021,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,office cupboard,Unibas & Unibe & UZH,BMC & TKI & TIG,
+,425,2021-11-20,Mouse21,N/A,brain,Mouse21_male_dead_25p3_0p1ulmin_Xul_2k_h2,N/A,1,,post mortem,C57BL/6,wild-type,healthy,standard tomography,height steps,Zenodo,,37.95,Double crystal monochromator,6.3 µm,2560,778,16.1 mm,4.9 mm,5 ms,5 ms,2000,360 °,N/A,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Medium lens,100,2.2,250 µm LuAG,3.4 Gy/s,ESRF,ID17,ESRF,France,18/11/2021,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,office cupboard,Unibas & Unibe & UZH,BMC & TKI & TIG,
+,425,2021-11-20,Mouse21,N/A,brain,Mouse21_male_dead_25p3_0p1ulmin_Xul_2k_h3,N/A,1,,post mortem,C57BL/6,wild-type,healthy,standard tomography,height steps,Zenodo,,37.95,Double crystal monochromator,6.3 µm,2560,778,16.1 mm,4.9 mm,5 ms,5 ms,2000,360 °,N/A,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Medium lens,100,2.2,250 µm LuAG,3.4 Gy/s,ESRF,ID17,ESRF,France,18/11/2021,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,office cupboard,Unibas & Unibe & UZH,BMC & TKI & TIG,

webpage_contents/experiments/synchrotron_microCT/ESRF_2022_June/metadata_tables/Mouse_list_ESRF_2022_June.csv

+Subject_ID,Date,Preparation,Contrast_agent_Injection_location,Comments,Stereotactic_coordinates_used_previously_at,Stereotactic_coordinate_X_(Lateral-Medial),Stereotactic_coordinate_Y_(Posterior-Anterior),Stereotactic_coordinate_Z_(Ventral-Dorsal),Sex,Body_weight,Date_of_birth,Strain,Genetic_strain_type,Pathology,Infusion_cannula_length,Contrast_agent_concentration,Contrast_agent_infusion_rate,Contrast_agent_maintenance_infusion_rate,Contrast_agent_infusion_volume,Contrast_agent_infusion_start_time,Contrast_agent_infusion_started_before_scan_name,Anesthesia_induction,Anesthesia_maintenance,Analgesia,Artificial_ventilation,Research_group_institution,Research_group,Table_date_csv_export
+mouse50,2022-06-05,in vivo,cisterna magna,"Error in the original subject folder name, 0p5 uL/min was the correct infusion rate. Modified original name",TKI,N/A,N/A,N/A,Male,23.7,Unavailable,C57BL/6,wild-type,healthy,N/A,480 mg Ba/ml,0.5 µl/min,0 µl/min,2.5 µl,22:15,cisternaMagna_timeseries2_003_,"ketamine 73 mg/kg,medetomidine 0.18 mg/kg","Ketamine (73 mg/kg),Medetomidine (0.18 mg/kg)",Buprenorphine (0.1 mg/kg),tracheotomy,Unibas & Unibe & UZH,BMC & TKI & TIG,04/09/2024
+mouse63,2022-06-07,in vivo,no contrast agent,Missing camera data. Second infusion of 1.8 uL at 0.2 uL/min before thirdventricle_timeseries3_001_ starts,TKI,-0.95,0.22,-2.3,Female,22.8,Unavailable,C57BL/6,wild-type,healthy,2.3 mm,480 mg Ba/ml,0.2 µl/min,0 µl/min,1 µl,02:04:29,thirdventricle_timeseries2_001_,"ketamine 73 mg/kg,medetomidine 0.18 mg/kg","Ketamine (73 mg/kg),Medetomidine (0.18 mg/kg)",Buprenorphine (0.1 mg/kg),tracheotomy,Unibas & Unibe & UZH,BMC & TKI & TIG,
\ No newline at end of file

webpage_contents/experiments/synchrotron_microCT/ESRF_2022_June/metadata_tables/Mouse_list_ESRF_June_2022.csv

-SubjectID,University,Research_group,Year,Month,Date_acquisition,Data_type,Dataproject_ID,Facility_proposal_ID,Facility_institution,Facility_country,Facility_name,Facility_sub
-mouse50,UZH,The Interface Group,2022,June,05/06/2022,synchrotron_microCT,in vivo CSF,md1324,,France,ESRF,ID17
-mouse63,UZH,The Interface Group,2022,June,07/06/2022,synchrotron_microCT,in vivo CSF,md1324,,France,ESRF,ID17
\ No newline at end of file

webpage_contents/experiments/synchrotron_microCT/ESRF_2022_June/metadata_tables/Mouse_list_ESRF_June_2022_codebook.csv

-SubjectID,Mice unique identifier
-University,"University affiliation of the group who collected the data (e.g., UZH; see glossary)"
-Research_group,"Abbreviation describing the group who collected the data (e.g., TIG; see glossary)"
-Year,Year of collection YYYY
-Month,"Month of collection (Jan, Feb, Mar, etc)"
-Date_acquisition,DD/MM/YYYY
-Data_type,"Abbreviation describing the type of data collected (e.g., SRµCT; see glossary)"
-Dataproject_ID,"(optional) Identifier of the project from which the data package derives, e.g., In Vivo CSF"
-Facility_proposal_ID,"(optional) Number of the proposal for facility usage e.g., the beamline numbers"
-Facility_institution,Name or acronym of the institution hosting the main facility (it can be the same as University)
-Facility_country,Country where the facility is located
-Facility_name,"Name or acronym of the main facility (e.g., CLS, SPring-8,etc)"
-Facility_sub,"(optional) Additional facility information (e.g., beamline)"

webpage_contents/experiments/synchrotron_microCT/ESRF_2022_June/metadata_tables/Scan_list_ESRF_June_2022.csv

-SubjectID,University,Research_group,Year,Month,Date_acquisition,Data_type,Dataproject_ID,Facility_proposal_ID,Facility_institution,Facility_country,Facility_name,Facility_sub
-mouse50,UZH,The Interface Group,2022,June,05/06/2022,SRCT,in vivo CSF,md1324,,France,ESRF,ID17
-mouse63,UZH,The Interface Group,2022,June,07/06/2022,SRCT,in vivo CSF,md1324,,France,ESRF,ID17

webpage_contents/experiments/synchrotron_microCT/ESRF_2022_June/metadata_tables/Scan_list_ESRF_June_2022_codebook.csv

-Variable,Description
-SubjectID," ""Mice unique identifier"""
-University,"University affiliation of the group who collected the data (e.g., UZH; see glossary)"
-Research_group,"Abbreviation describing the group who collected the data (e.g., TIG; see glossary)"
-Year," ""Year of collection YYYY"""
-Month,"Month of collection (Jan, Feb, Mar, etc)"
-Date_acquisition," ""DD/MM/YYYY"""
-Data_type,"Abbreviation describing the type of data collected (e.g., SRµCT; see glossary)"
-Dataproject_ID,"(optional) Identifier of the project from which the data package derives, e.g., In Vivo CSF"
-Facility_proposal_ID,"(optional) Number of the proposal for facility usage e.g., the beamline numbers"
-Facility_institution," ""Name or acronym of the institution hosting the main facility (it can be the same as University)"""
-Facility_country,Country where the facility is located
-Facility_name,"Name or acronym of the main facility (e.g., CLS, SPring-8,etc)"
-Facility_sub,"(optional) Additional facility information (e.g., beamline)"

webpage_contents/experiments/synchrotron_microCT/SPring-8_May_2023/Mice_Information_SPring-8_20230508.csv

-SubjectID,Sex,Body weight [g],Cannula length (mm),Dilution,Concentration,Withdrawn CA in syringe (uL),Infused CA in mannitol (uL),Injection 1 rate (uL/min),Injection 1 volume (uL) ,Injection 1 JP time (HH:MM),Injection 2 rate (uL/min),Injection 2 volume (uL) ,Injection 2 JP time (HH:MM),Bubbles?,Comments, anything different in the protocol?
-JP01,Male,27.5,2.3,1.5x,480 mg Ba/ml,5,,0.1,2.5,15:05,,,,,scanned dead,
-JP02,Male,26.6,2.3,1.5x,480 mg Ba/ml,5,,0.1,2.5,18:16,,,,,scanned dead,
-JP03,Male,27.5,2.3,1.5x,480 mg Ba/ml,5,,0.1,2.5,20:55,,,,,probably not full volume injected, scanned dead
-JP04,Female,20.2,2.3,1.5x,480 mg Ba/ml,5,,0.1,2.5,11:15,,,,,scanned dead,
-JP05,Female,20.2,2.2,1.5x,480 mg Ba/ml,5,,0.1,2.5,15:01,,,,,scanned dead,
-JP06,Female,20.3,2.2,1.5x,480 mg Ba/ml,5,,0.1,2.5,,,,,,scanned dead,
-JP07,Male,26.4,2.3,1.5x,480 mg Ba/ml,5,,0.1,2.5,17:00,,,,,scanned dead,
-JP08,Male,24.6,2.3,1.5x,480 mg Ba/ml,5,,0.1,2.5,12:45,,,,,injection post mortem, scanned dead
-JP09,Male,26.8,2.3,1.5x,480 mg Ba/ml,17,0.2,0.5,5,13:56,,,,,not all 17ul withdrawn (air?),
-JP10,Male,25.7,2.3,1.5x,480 mg Ba/ml,17,0.2,0.5,5,16:33,,,,,not all 17ul withdrawn, air bubbles
-JP11,Male,24.4,2.3,1.5x,480 mg Ba/ml,17,0.2,0.5,5,18:45,,,,,injection post mortem,
-JP12,Male,25.3,2.3,1x,320 mg Ba/ml,17,0.2,0.5,5,20:44,,,,,injection post mortem,
-JP13,Male,24.7,2.2,1x,320 mg Ba/ml,17,0.5,0.5,5,11:14,0.5,5,12:15,,poor life signs after first injection; mouse dies within 6 min of second injection,
-JP14,Male,27,2.2,1x,320 mg Ba/ml,17,0.5,0.5,2.5,13.38,0.5,2.5,14:49,,ramp up from 0.02 ul/min to 0.5 ul/min during 60 s; between injections 0.02 ul/min; mouse recovers better after start of injection,
-JP15,Male,24,2.2,1x,320 mg Ba/ml,17,0.5,0.5,2.5,16:24,0.5,2.5,17:26,,ramp up from 0.02 ul/min to 0.5 ul/min during 60 s,
-JP16,Male,25.8,2.2,1x,320 mg Ba/ml,17,0.5,0.5,2.5,20:10,0.5,2.5,21:14,,ramp up from 0.02 ul/min to 0.5 ul/min during 60 s; second injection in the dead mouse,
-JP17,Male,26.4,2.2,1x,320 mg Ba/ml,17,0.5,0.5,2.5,22:58,0.5,2.5,23:40,,ramp up from 0.02 ul/min to 0.5 ul/min during 60 s; at second injection mouse was already dying; injection killed it quickly,
-JP18,Male,26.6,2.2,0.75x,240 mg Ba/ml,17,0.5,0.5,2.5,10:01,,,,,mouse starts dying 15 min after injection,
-JP19,Male,26.9,2.2,0.75x,240 mg Ba/ml,17,0.5,0.5,2.5,12:54,,,,,mouse starts dying 16 min after injection,
-JP20,Male,26.2,2.2,0.75x,240 mg Ba/ml,17,0.5,0.5,2.5,15:39,0.5,2.5,16:35,,mouse starts dying 20 min after second injection,
-JP21,Female,21,2.2,0.75x,240 mg Ba/ml,10,0.5,0.25,5,17:53,,,,,ramp up from 0.02 ul/min to 0.25 ul/min during 60 s; between injections 0.02 ul/min,
-JP22,Female,19.5,2.2,0.75x,240 mg Ba/ml,10,0.5,0.25,5,20:48,0.25,2.5,22:31,,second injection no ramp up, observed in the spine
-JP23,Female,19.6,2.2,0.75x,240 mg Ba/ml,10,0.5,0.25,5,23:28,,,,,injection in parenchyma,
-JP24,Female,19.56,2.3,0.75x,240 mg Ba/ml,10,0.5,0.25,5,11:20,,,,,contrast agent didn't go in,
-JP25,Female,19.63,2.3,0.75x,240 mg Ba/ml,10,0.5,0.25,5,13:10,,,,,injection in parenchyma,
-JP26,Female,19.71,2.3,0.75x,240 mg Ba/ml,10,0.5,0.25,5,16:58,,,,,best animal so far,
-JP27,Female,19.2,2.2,0.75x,240 mg Ba/ml,10,0.5,0.25,5,20:04,,,,,mouse dead at mounting; inject post mortem,
-JP28,Female,20.2,2.2,0.75x,240 mg Ba/ml,10,0.5,0.25,5,22:19,0.25,5,00:06,,good; second injection interrupted,
-JP29,Female,18.6,2.2,0.75x,240 mg Ba/ml,10,0.5,0.25,5,09:53,,,,,good,
-JP30,Female,19.03,2.2,0.75x,240 mg Ba/ml,10,0.5,0.25,5,12:11,0.25,ca. 2.5,13:47,,good; not all of second injection covered by scans,
-JP31,Female,20.5,2.2,0.75x,240 mg Ba/ml,10,1,0.25,5,14:42,,,,,good; but mouse died 25 min. after injection,
-JP32,Female,20.2,2.2,0.75x,240 mg Ba/ml,10,1,0.25,5,16:49,0.25,ca. 2.5,18:28,,good,
-JP33,Female,21.2,2.2,0.75x,240 mg Ba/ml,10,1,0.25,5,19:11,0.25,ca. 2.5,20:47,,good,
-JP34,Female,19.21,N/A,N/A,N/A,N/A,N/A,N/A,N/A,N/A,N/A,N/A,N/A,,no contrast agent,

webpage_contents/experiments/synchrotron_microCT/SPring-8_May_2023/SPring-8_BL20B2_2023A1208_Scanlist.csv

-SPring-8 BL20B2 Beamtime 2023A1208 May 2023,,,,
-Scan name,Number of subscans,ECG data,On Disk No.,Notes
-CA-dilution-1scan-afterJP15standing,,,Disk 1,
-CA-dilution-1scan-afterJP15standingVortex2min,,,Disk 1,
-CA-dilution-1scan-V2US15standing,,,Disk 1,
-CA-dilution-1scan-vortex2min,,,Disk 1,
-CA-dilution-1scan-vortex2min-v2,,,Disk 1,
-CA-dilution-1sca-vortex2minUSbath15min,,,Disk 1,
-Calib01_033_perc_v2,,,Disk 1,
-Calib01_033perc,,,Disk 1,
-Calib01_050perc,,,Disk 1,
-Calib01_050perc_v2,,,Disk 1,
-Calib01_050perc_v3,,,Disk 1,
-Calib01_050perc_v4,,,Disk 1,
-Calib01_050perc_v5,,,Disk 1,
-Calib01_067perc,,,Disk 1,
-Calib01_070perc,,,Disk 1,
-Calib01_100perc,,,Disk 1,
-Calib02_010perc_standing01,,,Disk 1,
-Calib02_010perc_standing02,,,Disk 1,
-Calib02_010perc_vortex2min01,,,Disk 1,
-Calib02_010perc_vortex2min02,,,Disk 1,
-Calib02_025perc_standing01,,,Disk 1,
-Calib02_025perc_standing02,,,Disk 1,
-Calib02_025perc_vortex2min01,,,Disk 1,
-Calib02_025perc_vortex2min02,,,Disk 1,
-Calib02_033perc_standing01,,,Disk 1,
-Calib02_033perc_standing02,,,Disk 1,
-Calib02_033perc_vortex2min01,,,Disk 1,
-Calib02_033perc_vortex2min02,,,Disk 1,
-Calib02_050perc_standing01,,,Disk 1,
-Calib02_050perc_standing02,,,Disk 1,
-Calib02_050perc_vortex2min01,,,Disk 1,
-Calib02_050perc_vortex2min01_v2,,,Disk 1,
-Calib02_050perc_vortex2min02,,,Disk 1,
-Calib03_000perc_abso,,,Disk 1,
-Calib03_010perc_abso,,,Disk 1,
-Calib03_025perc_abso,,,Disk 1,
-Calib03_033perc_abso,,,Disk 1,
-Calib03_050perc_abso,,,Disk 1,
-Calib03_050perc_abso_standing,,,Disk 1,shutter was open for dark-fields. Copied dark.img from JP14-invivo-1prescan-h1-bulbs
-Calib03_pureH2O_abso,,,Disk 1,
-cut-implant-01,,,Disk 1,
-cut-implant-01-v2,,,Disk 1,
-cut-implant-02,,,Disk 1,
-drilled-implant-01,,,Disk 1,
-ear-bar-left01,,,Disk 1,
-earbar-right01,,,Disk 1,
-flat_series_001ms,,,Disk 1,Flat fields recorded at different exposure times to model detector response
-flat_series_002ms,,,Disk 1,Flat fields recorded at different exposure times to model detector response
-flat_series_003ms,,,Disk 1,Flat fields recorded at different exposure times to model detector response
-flat_series_004ms,,,Disk 1,Flat fields recorded at different exposure times to model detector response
-flat_series_005ms,,,Disk 1,Flat fields recorded at different exposure times to model detector response
-Implant01,,,Disk 1,
-implant01_dremel,,,Disk 1,
-implant02_dremel,,,Disk 1,
-JP01-dead-1scan,,,Disk 1,
-JP02-dead-1scan,,,Disk 1,scan failed
-JP02-dead-1scan-v2,,,Disk 1,scan failed
-JP02-dead-1scan-v3,,,Disk 1,
-JP03-dead-1scan,,,Disk 1,
-JP04-dead-1scan,,,Disk 1,scan failed
-JP04-dead-1scan-v2,,,Disk 1,
-JP04-dead-1scan-v3,,,Disk 1,
-JP05-dead-1scan,,,Disk 1,
-JP06-dead-1scan,,,Disk 1,
-JP07-dead-1scan,,,Disk 1,
-JP08-dead-1scan,,,Disk 1,
-JP09-invivo-1scan-head,,yes,Disk 1,
-JP09-invivo-1scan-neck,,yes,Disk 1,
-JP09-invivo-1scan-nose,,yes,Disk 1,
-JP09-invivo-1scan-nose-v2,,yes,Disk 1,
-JP09-invivo-20scan-phase1-injection,20 scan,yes,Disk 1,
-JP10-invivo-14scan-phase1-injection,14 scan,yes,Disk 1,
-JP10-invivo-1prescan-brain,,yes,Disk 1,
-JP10-invivo-1prescan-h1-bulbs,,yes,Disk 1,
-JP10-invivo-1prescan-h2-spine,,yes,Disk 1,
-JP10-invivo-5scan-maintain,5 scan,issues at scans 1 and 5,Disk 1,
-JP10-invivo-5scan-maintain2,5 scan,yes,Disk 1,
-JP11-dying-10scan-phase1-injection,10 scan,no,Disk 1,
-JP12-dying-10scan-phase1-injection,10 scan,yes,Disk 1,
-JP12-dying-10scan-phase2-injection,10 scan,no,Disk 1,
-JP13-dead-14scan-phase4-maintain,14 scan,dying! ECG reducing from 5,Disk 1,
-JP13-invivo-10scan-phase2-maintain,10 scan,issues at scans 7 and 8,Disk 1,
-JP13-invivo-10scan-phase2-maintain2,10 scan,yes,Disk 1,
-JP13-invivo-10scan-phase2-maintain3,10 scan,yes,Disk 1,
-JP13-invivo-14scan-phase1-injection,14 scan,yes,Disk 1,
-JP13-invivo-14scan-phase3-injection,14 scan,yes,Disk 1,
-JP13-invivo-1prescan-h1-bulbs,,yes,Disk 1,
-JP13-invivo-1prescan-h2-spine,,yes,Disk 1,
-JP14-dead-10scan-phase3-injection,10 scan,dead,Disk 1,
-JP14-invivo-10scan-phase2-maintain2,10 scan,yes,Disk 1,
-JP14-invivo-14scan-phase1pinjection,14 scan,yes,Disk 1,
-JP14-invivo-1prescan-h1-bulbs,,yes,Disk 1,
-JP14-invivo-1prescan-h2-spine,,yes,Disk 1,
-JP14-invivo-55scan-phase2-maintain,55 scan,yes,Disk 1,
-JP15-invivo-10scan-phase1-injection,10 scan,yes,Disk 1,
-JP15-invivo-10scan-phase2-maintain,10 scan,yes,Disk 1,motion artifacts
-JP15-invivo-10scan-phase3-injection,10 scan,yes,Disk 1,
-JP15-invivo-1prescan-h1-bulbs,,yes,Disk 1,
-JP15-invivo-1prescan-h2-spine,,yes,Disk 1,
-JP15-invivo-20scan-phase4-maintain,20 scan,yes,Disk 1,
-JP15-invivo-30scan-phase4-maintain2,30 scan,yes,Disk 1,
-JP16-dead-10scan-phase3-injection,10 scan,,Disk 2,
-JP16-invivo-10scan-phase1-injection,10 scan,,Disk 2,
-JP16-invivo-1prescan-h1-bulbs,,,Disk 2,
-JP16-invivo-1prescan-h2-spine,,,Disk 2,
-JP16-invivo-50scan-phase2-maintain,50 scan,,Disk 2,"File incomplete,  1001 projections missing at the end. Used spl_c2 to extract the projections of scan 1 - 49. Scans 3 - 49 did not determine center of rotation correctly (last projection mirrored?). All scans were reconstructed with constant center of rotation = 1026"
-JP17-invivo-10scan-phase1-infusion,10 scan,,Disk 2,
-JP17-invivo-1prescan-h1-bulbs,,,Disk 2,
-JP17-invivo-1prescan-h2-spine,,,Disk 2,
-JP17-invivo-20scan-phase2-maintain,20 scan,,Disk 2,
-JP17-invivo-20scan-phase3-infusion,20 scan,,Disk 2,
-JP18-invivo-10scan-phase1-injection,10 scan,,Disk 2,
-JP18-invivo-1prescan-h1-bulbs,,,Disk 2,capnograph tubing in flat-field
-JP18-invivo-1prescan-h1-bulbs-v2,,,Disk 2,
-JP18-invivo-1prescan-h2-spine,,,Disk 2,
-JP19-invivo-10scan-phase1-wait,10 scan,,Disk 2,
-JP19-invivo-1postscan-h1-bulbs,,,Disk 2,
-JP19-invivo-1postscan-h2-spine,,,Disk 2,
-JP19-invivo-1prescan-h1-bulbs,,,Disk 2,
-JP19-invivo-1prescan-h2-spine,,,Disk 2,
-JP19-invivo-1scan-phase2-preinjection,,,Disk 2,
-JP19-invivo-1scan-phase3-postinjection,,,Disk 2,
-JP19-invivo-1scan-phase4-10min,,,Disk 2,
-JP19-invivo-1scan-phase4-20min,,,Disk 2,
-JP19-invivo-1scan-phase4-30min,,,Disk 2,
-JP19-invivo-1scan-phase5-preinjection,,,Disk 2,
-JP19-invivo-1scan-phase6-postinjection,,,Disk 2,
-JP19-invivo-1scan-phase7-10min,,,Disk 2,
-JP19-invivo-30scan-phase1-wait2,30 scan,,Disk 2,"Shutter was deliberately closed for scan 11 – 29, after it became clear that radiation dose was the issue"
-JP20-invivo-1prescan-h1-bulbs,,,Disk 2,scan failed
-JP20-invivo-1prescan-h1-bulbs-v2,,,Disk 2,
-JP20-invivo-1prescan-h2-spine,,,Disk 2,scan failed
-JP20-invivo-1prescan-h2-spine-v2,,,Disk 2,
-JP20-invivo-1scan-h1-bulbs-1,,,Disk 2,
-JP20-invivo-1scan-h1-bulbs-2,,,Disk 2,
-JP20-invivo-1scan-h1-bulbs-3,,,Disk 2,
-JP20-invivo-1scan-h1-bulbs-4-preinjection,,,Disk 2,
-JP20-invivo-1scan-h1-bulbs-5-postinjection,,,Disk 2,
-JP20-invivo-1scan-h2-spine-1,,,Disk 2,
-JP20-invivo-1scan-h2-spine-2,,,Disk 2,
-JP20-invivo-1scan-h2-spine-3,,,Disk 2,
-JP20-invivo-1scan-h2-spine-4-preinjection,,,Disk 2,
-JP20-invivo-1scan-h2-spine-5-postinjection,,,Disk 2,
-JP20-invivo-3scan-phase1-injection,3 scan,,Disk 2,
-JP21-invivo-1scan-phase1-preinjection,,,Disk 2,
-JP21-invivo-1scan-phase2-injection-brain-10min,,,Disk 2,
-JP21-invivo-1scan-phase2-injection-nose,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-100min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-110min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-120min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-20min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-30min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-40min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-50min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-60min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-70min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-80min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-brain-90min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-nose-120min,,,Disk 2,
-JP21-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP22-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP22-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP22-invivo-1scan-phase2-injection-nose-60min,,,Disk 2,
-JP22-invivo-1scan-phase3-postinjection-brain-70min,,,Disk 2,
-JP22-invivo-1scan-phase3-postinjection-brain-80min,,,Disk 2,
-JP22-invivo-1scan-phase3-postinjection-brain-90min,,,Disk 2,
-JP22-invivo-1scan-phase4-injection-spine-90min,,,Disk 2,
-JP22-invivo-1scan-phase4-injection-spine-95min,,,Disk 2,
-JP22-invivo-6scan-phase2-injection-brain,6 scan,,Disk 2,
-JP23-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP23-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP23-invivo-1scan-phase2-injection-brain-10min,,,Disk 2,
-JP23-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP23-invivo-2scan-phase3-postinjection-brain-70-80min,2 scan,,Disk 2,
-JP23-invivo-5scan-phase3-postinjection-brain-20-60min,5 scan,,Disk 2,
-JP24-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP24-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP24-invivo-1scan-phase2-injection-brain,,,Disk 2,
-JP24-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP24-invivo-5scan-phase3-postinjection-brain,5 scan,,Disk 2,
-JP25-invivo-1scan-phase1-injection-brain,,,Disk 2,
-JP25-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP25-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP25-invivo-1scan-phase3-postinjection-brain-100min,,,Disk 2,
-JP25-invivo-1scan-phase3-postinjection-brain-110min,,,Disk 2,
-JP25-invivo-1scan-phase3-postinjection-brain-70min,,,Disk 2,
-JP25-invivo-1scan-phase3-postinjection-brain-80min,,,Disk 2,
-JP25-invivo-1scan-phase3-postinjection-brain-90min,,,Disk 2,
-JP25-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP25-invivo-5scan-phase3-postinjection-brain,5 scan,,Disk 2,
-JP26-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP26-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP26-invivo-1scan-phase2-injection-brain,,,Disk 2,
-JP26-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP26-invivo-2scan-phase3-postinjection-brain-80-90min,1 scan,,Disk 2,is actually only one scan
-JP26-invivo-5scan-phase3-postinjection-brain,5 scan,,Disk 2,
-jp27-dead-1scan-phase1-preinjection-brain,,,Disk 2,
-jp27-dead-1scan-phase1-preinjection-nose,,,Disk 2,
-JP27-dead-1scan-phase2-injection1-brain,,,Disk 2,
-JP27-dead-30scan-phase2-injection2-brain,30 scan,,Disk 2,
-JP28-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP28-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP28-invivo-1scan-phase2-injection-brain-v2,,,Disk 2,
-JP28-invivo-1scan-phase2-injection-nose,,,Disk 2,
-JP28-invivo-1scan-phase3-postinjection-brain-70min,,,Disk 2,
-JP28-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP28-invivo-30scan-phase4-reinjection-brain-continuous-110min,30 scan,,Disk 2,
-JP28-invivo-3scan-phase3-postinjection-brain-80-100min,3 scan,,Disk 2,
-JP28-invivo-5scan-phase3-postinjection-brain,5 scan,,Disk 2,
-JP29-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP29-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP29-invivo-1scan-phase2-injection-brain,,,Disk 2,
-JP29-invivo-1scan-phase3-postinjection-brain-90min,,,Disk 2,
-JP29-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP29-invivo-2scan-phase3-postinjection-brain-70min-80min,2 scan,,Disk 2,
-JP29-invivo-5scan-phase3-postinjection-brain,5 scan,,Disk 2,
-JP30-invivo-10scan-phase4-reinjection-brain-continuous,10 scan,,Disk 2,
-JP30-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP30-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP30-invivo-1scan-phase2-injection-brain,,,Disk 2,
-JP30-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP30-invivo-3scan-phase3-postinjection-brain-70min-90min,3 scan,,Disk 2,
-JP30-invivo-5scan-phase3-postinjection-brain,5 scan,,Disk 2,
-JP31-dead-1scan-phase3-postinjection-brain-65min,,,Disk 2,
-JP31-dead-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP31-dead-1scan-phase3-postinjection-spine-80min,,,Disk 2,"missing a.HIS file, was never recorded"
-JP31-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP31-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP31-invivo-1scan-phase2-injection-brain,,,Disk 2,
-JP31-invivo-5scan-phase3-postinjection-brain,5 scan,,Disk 2,
-JP32-invivo-10scan-phase4-reinjection-brain-continuous,10 scan,,Disk 2,
-JP32-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP32-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP32-invivo-1scan-phase2-injection-brain,,,Disk 2,
-JP32-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP32-invivo-3scan-phase3-postinjection-brain-70min-90min,3 scan,,Disk 2,
-JP32-invivo-5scan-phase3-postinjection-brain,5 scan,,Disk 2,
-JP33-invivo-10scan-phase4-reinjection-brain-continuous,10 scan,,Disk 2,
-JP33-invivo-1scan-phase1-preinjection-brain,,,Disk 2,
-JP33-invivo-1scan-phase1-preinjection-nose,,,Disk 2,
-JP33-invivo-1scan-phase2-injection-brain,,,Disk 2,
-JP33-invivo-1scan-phase3-postinjection-nose-60min,,,Disk 2,
-JP33-invivo-3scan-phase3-postinjection-brain-70min-90min,3 scan,,Disk 2,
-JP33-invivo-5scan-phase3-postinjection-brain,5 scan,,Disk 2,
-JP34-invivo-scan1-brain,,,Disk 2,
-JP34-invivo-scan2-nose,,,Disk 2,
-JP34-invivo-scan3-spine,,,Disk 2,
-JP34-invivo-scan4-60scans-brain,60 scan,,Disk 2,
-purified_water_eppendorf01,,,Disk 1,
-purified_water_eppendorf02,,,Disk 1,
-test01,,,Disk 1,
-test02,,,Disk 1,
-test03,,,Disk 1,
-test04,,,Disk 1,
-test05,,,Disk 1,
-test06,,,Disk 1,
-test07,,,Disk 1,