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Verified Commit 3c830615 authored by Marta Girona Alarcon's avatar Marta Girona Alarcon Committed by GitLab UZH
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add another table

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...@@ -31,6 +31,21 @@ ADD ZENODO SCREENSHOT ...@@ -31,6 +31,21 @@ ADD ZENODO SCREENSHOT
In a previous beamtime (ESRF, 2020, December), *ex vivo* imaging was performed. The goal of the pilot experiments was to chose a contrast agent for the presented *in vivo* experiments. In a previous beamtime (ESRF, 2020, December), *ex vivo* imaging was performed. The goal of the pilot experiments was to chose a contrast agent for the presented *in vivo* experiments.
The list of used contrast agents is available under the Zenodo download entry "tables". The list of used contrast agents is available under the Zenodo download entry "tables".
![](images/post_mortem_overview.png) ![](images/post_mortem_overview.png)
```{r}
# SET options for table rendering in this page
options(DT.options = list(fixedHeader = TRUE,
scrollX = TRUE,
scrollY = "800px",
paging = FALSE,
scrollCollapse = TRUE,
autoWidth = TRUE))
```
```{r}
tbl <- read.csv(file = 'exVivo_Contrast_agent_per_mouse_list.csv')
DT::datatable(tbl, extensions = c('FixedHeader'), filter = 'top', rownames = FALSE)
```
*Fig. 2. Ex vivo coronal slices of three different mice injected with (left) Gadolinium-based, (middle) Barium-based and (right) Gold-based contrast agent* *Fig. 2. Ex vivo coronal slices of three different mice injected with (left) Gadolinium-based, (middle) Barium-based and (right) Gold-based contrast agent*
We considered the Barium-based contrast agent (CA) to be the most promissing one and therefore decided to employ it for the *in vivo* experiments. We considered the Barium-based contrast agent (CA) to be the most promissing one and therefore decided to employ it for the *in vivo* experiments.
...@@ -70,21 +85,11 @@ Additionally, we assambled a customized mouse stage for two surgical procedures: ...@@ -70,21 +85,11 @@ Additionally, we assambled a customized mouse stage for two surgical procedures:
### ###
```{r}
# SET options for table rendering in this page
options(DT.options = list(fixedHeader = TRUE,
scrollX = TRUE,
scrollY = "800px",
paging = FALSE,
scrollCollapse = TRUE,
autoWidth = TRUE))
```
Equipment and consumables are provided as a table: Equipment and consumables are provided as a table:
```{r} ```{r}
equipment_tbl <- read.csv(file = 'Equipment_table.csv') tbl <- read.csv(file = 'Equipment_table.csv')
DT::datatable(equipment_tbl, extensions = c('FixedHeader'), filter = 'top', rownames = FALSE) DT::datatable(tbl, extensions = c('FixedHeader'), filter = 'top', rownames = FALSE)
``` ```
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