Skip to content
Snippets Groups Projects

Update file assembly_exercise.md

Merged Fanny Wegner requested to merge master-patch-b67d into master
1 file
+ 3
7
Compare changes
  • Side-by-side
  • Inline
@@ -57,10 +57,6 @@ cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_d
```
### Running the analysis
In the assembly scripts you need to specify the variables for the input and output data.
@@ -74,6 +70,9 @@ Submit for each platform the respective assembly script.
* In your `data` space, please create a directory called `ngs`. Inside `ngs`, make a directory for each assembly approach, i.e. `nanopore`, `illumina`, `hybrid`.
The scripts here, include the assembly as well as the annotation step.
* Copy the following datasets
**Illumina**
@@ -96,9 +95,6 @@ Submit for each platform the respective assembly script.
# copy all scripts
cp /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore_scripts/*.sh /data/$USER/ngs/nanopore/
```
**Hybrid**
Loading