Skip to content
Snippets Groups Projects

added qc exercise

Merged added qc exercise
master-patch-2ca8 into master
Merged Srinithi Purushothaman requested to merge master-patch-2ca8 into master
Viewing commit 014b96e6
Show latest version
1 file
+ 23
− 0
Compare changes
  • Side-by-side
  • Inline
exercises/qc_exercise.md 0 → 100644
+ 23
− 0
# Quality Control (QC) Exercises
This document has the path for the sequencing data to be copied for the exercises.
## Absolute path for raw data and files
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_mrsa - raw fastq files for mrsa from illumina
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_upec/ - raw fastq files for upec from illumina
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/rawdata_mrsa/ - raw fastq files for mrsa from nanopore
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/rawdata_upec/ - raw fastq files foe upec from nanopore
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/sequencing_summary_FAS74008_3919db7b_5086a1cb.txt - seq summary file for mrsa qc
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/sequencing_summary_FAS66307_6bec0f82_c8f87af5.txt - seq summary file for upec qc
## Path for QC script
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore_scripts/nanopore_qc_nanoplot.sh