From 014b96e6e220b4c6cf12bb0fb1b3ce19355cdaeb Mon Sep 17 00:00:00 2001
From: Srinithi Purushothaman <spurushothaman@imm.uzh.ch>
Date: Wed, 22 Mar 2023 12:50:09 +0100
Subject: [PATCH] added qc exercise

---
 exercises/qc_exercise.md | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)
 create mode 100644 exercises/qc_exercise.md

diff --git a/exercises/qc_exercise.md b/exercises/qc_exercise.md
new file mode 100644
index 0000000..62be9ed
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+++ b/exercises/qc_exercise.md
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+# Quality Control (QC) Exercises
+
+This document has the path for the sequencing data to be copied for the exercises.
+
+## Absolute path for raw data and files
+
+/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_mrsa - raw fastq files for mrsa from illumina
+
+/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_upec/ - raw fastq files for upec from illumina
+
+/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/rawdata_mrsa/ - raw fastq files for mrsa from nanopore
+
+/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/rawdata_upec/ - raw fastq files foe upec from nanopore
+
+/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/sequencing_summary_FAS74008_3919db7b_5086a1cb.txt - seq summary file for mrsa qc
+
+/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/sequencing_summary_FAS66307_6bec0f82_c8f87af5.txt - seq summary file for upec qc
+
+## Path for QC script
+
+/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore_scripts/nanopore_qc_nanoplot.sh
+
+
-- 
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