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Commit c47296dd authored by Vanni Benvenga's avatar Vanni Benvenga
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Update file panaroo.sh

parent bdbdd9c0
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1 merge request!54Update file panaroo.sh
......@@ -28,6 +28,7 @@ mkdir -p panaroo/panaroo_output
# generate soft links to the .gff files while looping through the sample names
for sample_id in "${array[@]}"
do
echo $sample_id
ln -s $wd/$sample_id/prokka_annotation/$sample_id.gff $wd/panaroo/annotation_files/
done
......
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