From c47296dd0db694442169ae9232efe5c86b1ac8b9 Mon Sep 17 00:00:00 2001
From: Vanni Benvenga <vanni.benvenga@gmail.com>
Date: Thu, 23 Mar 2023 13:34:51 +0100
Subject: [PATCH] Update file panaroo.sh
---
exercises/Pangenome_analysis/panaroo.sh | 1 +
1 file changed, 1 insertion(+)
diff --git a/exercises/Pangenome_analysis/panaroo.sh b/exercises/Pangenome_analysis/panaroo.sh
index 5de027a..b8a788f 100644
--- a/exercises/Pangenome_analysis/panaroo.sh
+++ b/exercises/Pangenome_analysis/panaroo.sh
@@ -28,6 +28,7 @@ mkdir -p panaroo/panaroo_output
# generate soft links to the .gff files while looping through the sample names
for sample_id in "${array[@]}"
do
+ echo $sample_id
ln -s $wd/$sample_id/prokka_annotation/$sample_id.gff $wd/panaroo/annotation_files/
done
--
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