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Commit 8750b185 authored by Vanni Benvenga's avatar Vanni Benvenga
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Merge branch 'master-patch-944e-patch-50b8' into 'master'

Update file panaroo.sh

See merge request !54
parents a9a779c5 c47296dd
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1 merge request!54Update file panaroo.sh
...@@ -28,6 +28,7 @@ mkdir -p panaroo/panaroo_output ...@@ -28,6 +28,7 @@ mkdir -p panaroo/panaroo_output
# generate soft links to the .gff files while looping through the sample names # generate soft links to the .gff files while looping through the sample names
for sample_id in "${array[@]}" for sample_id in "${array[@]}"
do do
echo $sample_id
ln -s $wd/$sample_id/prokka_annotation/$sample_id.gff $wd/panaroo/annotation_files/ ln -s $wd/$sample_id/prokka_annotation/$sample_id.gff $wd/panaroo/annotation_files/
done done
......
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