diff --git a/exercises/Pangenome_analysis/panaroo.sh b/exercises/Pangenome_analysis/panaroo.sh index 5de027a39a05c95fd789836045f9ea76cd4ec286..b8a788f44a15c58d426d46ed9c8ab748134850d3 100644 --- a/exercises/Pangenome_analysis/panaroo.sh +++ b/exercises/Pangenome_analysis/panaroo.sh @@ -28,6 +28,7 @@ mkdir -p panaroo/panaroo_output # generate soft links to the .gff files while looping through the sample names for sample_id in "${array[@]}" do + echo $sample_id ln -s $wd/$sample_id/prokka_annotation/$sample_id.gff $wd/panaroo/annotation_files/ done