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Replication of null results - Absence of evidence or evidence of absence
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Samuel Pawel
Replication of null results - Absence of evidence or evidence of absence
Commits
2650271c
Commit
2650271c
authored
1 year ago
by
SamCH93
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data/preprocess-rpcb-data.R
+22
-0
22 additions, 0 deletions
data/preprocess-rpcb-data.R
paper/rsabsence.Rnw
+161
-136
161 additions, 136 deletions
paper/rsabsence.Rnw
rsabsence.pdf
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rsabsence.pdf
with
183 additions
and
136 deletions
data/preprocess-rpcb-data.R
+
22
−
0
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2650271c
...
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@@ -56,6 +56,11 @@ datClean %>%
successes
=
sum
(
resulto
==
"Null"
&
resultr
%in%
c
(
"Null-positive"
,
"Null-negative"
,
"Null"
)))
## this should give the same
datClean
%>%
summarise
(
nulls
=
sum
(
resulto
==
"Null"
),
successes
=
sum
(
resulto
==
"Null"
&
pr
>
0.05
))
## should give 112 original positive effects and 44 successful replications
## (see positive results in Table 1)
...
...
@@ -64,6 +69,12 @@ datClean %>%
successes
=
sum
(
resulto
==
"Positive"
&
resultr
==
"Positive"
&
sign
(
smdo
)
==
sign
(
smdr
)))
## this should give the same
datClean
%>%
summarise
(
positives
=
sum
(
resulto
==
"Positive"
),
successes
=
sum
(
resulto
==
"Positive"
&
pr
<
0.05
&
sign
(
smdo
)
==
sign
(
smdr
)))
## save
write.csv
(
datClean
,
"rpcb-outcome-level.csv"
,
row.names
=
FALSE
)
...
...
@@ -114,6 +125,11 @@ datClean2 %>%
successes
=
sum
(
resulto
==
"Null"
&
resultr
%in%
c
(
"Null-positive"
,
"Null-negative"
,
"Null"
)))
## this should give the same
datClean2
%>%
summarise
(
nulls
=
sum
(
resulto
==
"Null"
),
successes
=
sum
(
resulto
==
"Null"
&
pr
>
0.05
))
## should give 97 original positive effects and 42 successful replications
## (see positive results in Table 1)
...
...
@@ -122,6 +138,12 @@ datClean2 %>%
successes
=
sum
(
resulto
==
"Positive"
&
resultr
==
"Positive"
&
sign
(
smdo
)
==
sign
(
smdr
)))
## this should give the same
datClean2
%>%
summarise
(
positives
=
sum
(
resulto
==
"Positive"
),
successes
=
sum
(
resulto
==
"Positive"
&
pr
<
0.05
&
sign
(
smdo
)
==
sign
(
smdr
)))
## replicate Figure 1
## https://iiif.elifesciences.org/lax/71601%2Felife-71601-fig2-v3.tif/full/1500,/0/default.jpg
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