Explore projects
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Code for the materials of course "Introduction to Meta-Analysis"
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Scan Docker images for known vulnerabilities
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IMMense (IMM Extended Nextflow Sequencing Environment) is a Nextflow pipeline to analyze bacterial and fungal genomes. It covers genome assembly and annotation, species identification, resistance and virulence gene analysis as well as specific modules for selected species. The pipeline's strenghts are reproducible results by using singularity containers and a thorough quality control. IMMense can be deployed single machines as well as HPC clusters.
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Collection of resources for data stewardship.
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Preprocessing and Encoding for the Corpus Workbench (CWB) and the LiRI Corpus Platform (LCP).
Credit: Niclas Linus Bodenmann
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