IMMense

Project information

IMMense (IMM Extended Nextflow Sequencing Environment) is a Nextflow pipeline to analyze bacterial and fungal genomes. It covers genome assembly and annotation, species identification, resistance and virulence gene analysis as well as specific modules for selected species. The pipeline's strenghts are reproducible results by using singularity containers and a thorough quality control. IMMense can be deployed single machines as well as HPC clusters.

microbial ge... whole genome... WGS next-generat... NGS pathogens nextflow singularity

253 Commits
9 Branches
4 Tags

README
GNU General Public License v3.0 or later
CHANGELOG

Created on

January 22, 2025

Loading