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IMMense (IMM Extended Nextflow Sequencing Environment) is a Nextflow pipeline to analyze bacterial and fungal genomes. It covers genome assembly and annotation, species identification, resistance and virulence gene analysis as well as specific modules for selected species. The pipeline's strenghts are reproducible results by using singularity containers and a thorough quality control. IMMense can be deployed single machines as well as HPC clusters.

Design and Analysis of Non-Inferiority and Equivalence Studies

Repository where the code to reproduce all analyses from `Assessing replicability with the sceptical p-value: Type-I error control and sample size planning' by Charlotte Micheloud, Fadoua Balabdaoui and Leonhard Held, is stored.

R-package with tools for (reverse-)Bayesian analysis of replication studies

Code to reproduce results from 'Pawel, S., Heyard, R., Micheloud, C., Held, L. (2023). Replication of null results - Absence of evidence or evidence of absence?'

Repository for the material of the course and the workshop `Design and Analysis of Replication Studies' by Leonhard Held and Charlotte Micheloud given at SINAPE 2022 in Gramado.