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Welcome to the home page of the Microbial Bioinformatics course.
## Course material
### Introduction to UNIX and HPC
- [ ] [Introduction to UNIX slides](slides/introduction_UNIX_HPC.pdf)
- [ ] [Exercise instructions](exercises/UNIX_HPC_exercise_instructions.md)
- [ ] [Cheat sheet](exercises/UNIX_HPC_cheat_sheet.md)
### Assembly
- [ ] [Exercise instructions](exercises/assembly_exercise_instructions.md)
## Getting started
### Windows
@@ -31,7 +17,7 @@ Please download and install one the two command line tools to connect to Science
There is already an application called **Terminal** installed on your system.
## Other software
### Other software
**Figtree** (https://github.com/rambaut/figtree/releases) - Software to visualise phylogenetic trees. Please download and unpack/install the
- zip for Windows
@@ -41,6 +27,28 @@ There is already an application called **Terminal** installed on your system.
## Course material
### Introduction to UNIX and HPC
- [ ] [Introduction to UNIX slides](slides/introduction_UNIX_HPC.pdf)
- [ ] [Exercise instructions](exercises/UNIX_HPC_exercise_instructions.md)
- [ ] [Cheat sheet](exercises/UNIX_HPC_cheat_sheet.md)
### Assembly
- [ ] [Exercise instructions](exercises/assembly_exercise_instructions.md)
### Phylogenetics
- [ ] [Introduction to phylogenetics slides](slides/introduction_phylogenetics.pdf)
- [ ] [Exercise instructions](exercises/phylogenetics_exercise_instructions.md)
### MLST
- [ ] [Exercise instructions]()
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