Update file README.md

README.md

@@ -52,7 +52,7 @@ A simple editor with syntax highlighting would be for example **BBEdit** which y
 - [ ] [Cheat sheet](exercises/UNIX_HPC_cheat_sheet.md)
 
 ### QC of sequencing data
-- [ ] [Exercise instructions](exercises/qc_exercise.md)
+- [ ] [Exercise instructions Nanopore](exercises/qc_exercise.md)
 
 ### Genome assembly
 - [ ] [Genome assembly](slides/230321_SP_TR_Assembly.pdf)
@@ -68,6 +68,18 @@ A simple editor with syntax highlighting would be for example **BBEdit** which y
 
 ### Phylogenetics
 - [ ] [Intro to Phylogenetics](slides/230329_intro_phylogenetics.pdf)
+- [ ] [Phylo exercise](exercises/phylo_exercise.md)
+- [ ] [Journal Club on MRSA outbreak](slides/230330_Journal_Club_Elisa_MRSA_WGS.pdf)
+- [ ] [Metadata and trees](slides/230331_Blockkurs_HSS_VisualisingPhylogeniesMetadata.pdf)
+- [ ] [Metadata exercise](exercises/230331_Blockkurs_HSS_MetadataExercise.pdf)
+
+
+### Resistence, virulence and diagnostic tests
+- [ ] [Identifyiing AMR & Virulence](slides/230331_TR_dentifying_resistance_and_virulence_factors.pdf)
+- [ ] [Virulence Factors](slides/230331_Blockkurs_FI_Virulence.pdf)
+- [ ] [PapGII: a UPEC virulence factor](slides/230331_papGII_VirulenceFactor_UPEC_YG.pdf)
+- [ ] [Case: Chlamydia](slides/230331_Blockkurs_HSS_Chlamydia.pdf)
+- [ ] [Primer design](slides/230331_Blockkurs_HSS_TR_PrimerDesign.pdf)