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Update file phylo_exercise.md

Merged Fanny Wegner requested to merge master-patch-36d8 into master
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@@ -203,6 +203,21 @@ Change the variables to your needs.
### DOWNLOAD TREE FILES
The complete output for the SNP calling, MSA and tree can be found here, download it into a `[target_directory]` of your choice.
```bash
# Typestrain as reference
cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/03_output_mrsa/snippy_ref_typestrain [target_directory]
# Hybrid assembly as reference
cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/03_output_mrsa/snippy_ref_hybrid [target_directory]
```
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