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Update file panaroo.sh

Closed Vanni Benvenga requested to merge master-patch-41eb-patch-cad1-patch-6b3f into master
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@@ -12,7 +12,7 @@
module load singularityce
# Declare variables
# input data folder
# input data folder (01_data_mrsa)
datadir=
# results folder (03_output_mrsa)
wd=
@@ -27,7 +27,6 @@ cd $wd
mkdir -p panaroo/annotation_files
mkdir -p panaroo/panaroo_output
# generate soft links to the .gff files while looping through the sample names
for sample_id in "${array[@]}"
do
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