Update file panaroo.sh

exercises/Pangenome_analysis/panaroo.sh

@@ -35,5 +35,5 @@ done
 # Runs singularity on the annotations and send the output to the output folder
 echo Starting panaroo $(date +"%T")
 cd panaroo
-$singpath/panaroo_1.3.0--pyhdfd78af_0.sif panaroo -i $wd/panaroo/annotation_files/*.gff -o ./panaroo_output/ --clean-mode strict --remove-invalid-genes
+$singpath/panaroo_1.3.0--pyhdfd78af_0.sif panaroo -i $wd/panaroo/annotation_files/*.gff -o ./panaroo_output/ --clean-mode strict --remove-invalid-genes --core_threshold
 echo Done $(date +"%T")
\ No newline at end of file