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Commit fa61a528 authored by Vanni Benvenga's avatar Vanni Benvenga
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Update file panaroo.sh

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exercises/Pangenome_analysis/panaroo.sh
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......@@ -39,5 +39,5 @@ echo Starting panaroo $(date +"%T")
cd $wd/panaroo
$singpath/panaroo_1.3.0--pyhdfd78af_0.sif \
panaroo -i ./annotation_files/*.gff -o ./panaroo_output/ \
--clean-mode strict --remove-invalid-genes --core_threshold 0.95 -t $SLURM_CPUS_PER_TASK
--clean-mode strict --remove-invalid-genes -a 'core' -t $SLURM_CPUS_PER_TASK
echo Done $(date +"%T")
\ No newline at end of file
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