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Commit 4980284e authored by Srinithi Purushothaman's avatar Srinithi Purushothaman
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Update file assembly_exercise.md

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......@@ -89,19 +89,19 @@ The scripts here, include the assembly as well as the annotation step.
```bash
# copy data sets
cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/rawdata_mrsa /data/$USER/ngs/nanopore/
cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2024/Participants_data/nanopore/Group1_mrsa/ /data/$USER/ngs/nanopore/
cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/rawdata_upec /data/$USER/ngs/nanopore/
cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2024/Participants_data/nanopore/Group2_upec/ /data/$USER/ngs/nanopore/
# copy all scripts
cp /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore_scripts/WGS_nanopore_assembly*.sh /data/$USER/ngs/nanopore/
cp /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2024/Participants_data/nanopore_scripts/WGS_nanopore_assembly*.sh /data/$USER/ngs/nanopore/
```
**Hybrid**
```bash
# copy scripts
cp /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/hybrid_assembly_scripts/*.sh /data/$USER/ngs/hybrid/
cp /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2024/Participants_data/hybrid_assembly_scripts/*.sh /data/$USER/ngs/hybrid/
```
......
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