Update abricate_exercise.md

exercises/abricate_exercise.md

@@ -39,11 +39,13 @@
 
     Add the following parameters `--quiet --nopath --db [DATABASE]`
 
-    Run abricate twice, once on `ncbi`, `card` and `vfdb`, respectively
+    Use > to write the samples output into a file instead of the commandline
+
+    abricate in the singularity image can be started like this
 
-    The Singularity image can be found at
+        srun singularity exec /shares/amr.imm.uzh/bioinfo/singularity/sandbox/abricate_1.0.1 abricate [my_file.fasta] --quiet --nopath -db [DATABASE] > outputfile
 
-        /shares/amr.imm.uzh/bioinfo/singularity/quay.io-biocontainers-abricate-1.0.1--ha8f3691_1.img
+    Run abricate twice, once on `ncbi`, `card` and `vfdb`, respectively
 
     Use the following SLURM parameters: