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Commit 07813d85 authored by Vanni Benvenga's avatar Vanni Benvenga
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Update file panaroo.sh

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exercises/Pangenome_analysis/panaroo.sh
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......@@ -35,5 +35,5 @@ done
# Runs singularity on the annotations and send the output to the output folder
echo Starting panaroo $(date +"%T")
cd panaroo
$singpath/panaroo_1.3.0--pyhdfd78af_0.sif panaroo -i $wd/panaroo/annotation_files/*.gff -o ./panaroo_output/ --clean-mode strict --remove-invalid-genes
$singpath/panaroo_1.3.0--pyhdfd78af_0.sif panaroo -i $wd/panaroo/annotation_files/*.gff -o ./panaroo_output/ --clean-mode strict --remove-invalid-genes --core_threshold
echo Done $(date +"%T")
\ No newline at end of file
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