From a938c7e102910ab8928d10e01b8de91d9a9a74d5 Mon Sep 17 00:00:00 2001 From: Marta Girona Alarcon <marta.gironaalarcon@uzh.ch> Date: Mon, 2 Sep 2024 23:25:28 +0200 Subject: [PATCH] deleted old lists --- .../Mouse_list_Facility_YYYY_month.csv | 1 - ..._Facility_YYYY_month_codebook_proposal.csv | 31 ------------------- ..._Facility_month_YYYY_codebook_proposal.csv | 15 --------- .../Scan_list_Synchrotron_YYYY_Month.csv | 1 - 4 files changed, 48 deletions(-) delete mode 100644 webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Mouse_list_Facility_YYYY_month.csv delete mode 100644 webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Mouse_list_Facility_YYYY_month_codebook_proposal.csv delete mode 100644 webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Scan_list_Facility_month_YYYY_codebook_proposal.csv delete mode 100644 webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Scan_list_Synchrotron_YYYY_Month.csv diff --git a/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Mouse_list_Facility_YYYY_month.csv b/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Mouse_list_Facility_YYYY_month.csv deleted file mode 100644 index d901730..0000000 --- a/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Mouse_list_Facility_YYYY_month.csv +++ /dev/null @@ -1 +0,0 @@ -SubjectID,Research_group_institution,Research_group,Year,Month,Date_of_acquisition,Data_type,Dataproject_ID,Facility_proposal_ID,Facility_institution,Facility_country,Facility_name,Facility_subunit diff --git a/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Mouse_list_Facility_YYYY_month_codebook_proposal.csv b/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Mouse_list_Facility_YYYY_month_codebook_proposal.csv deleted file mode 100644 index e42e9a2..0000000 --- a/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Mouse_list_Facility_YYYY_month_codebook_proposal.csv +++ /dev/null @@ -1,31 +0,0 @@ -Variable,Description -SubjectID,"Mice unique identifier" -Sex,"male/female" -Body weight [g],"Body weight in grams" -Artificial ventilation,"free/ventilation. Defines if animal was freely breating or ventilated after tracheotomy surgery" -Analgesia regime,"Medicine regime that was subministred for analgesia" -Analgesia dose [mg/kg],"Analgesia dose in mg/kg animal" -Anesthesia induction regime,"Medicine regime that was subministred for induction anesthesia" -Anesthesia induction dose [mg/kg],"Amount of anesthesia subministred in mg/kg mouse (intraperitoneal anesthesia) or percentage of the total gas (gas anesthesia)" -Anesthesia maintenance regime,"Medicine regime that was subministred for maintenance anesthesia" -Anesthesia maintenance dose [mg/kg or %],"Amount of anesthesia subministred in mg/kg mouse (intraperitoneal anesthesia) or percentage of the total gas (gas anesthesia)" -Cannula length [mm],"Length of the infusion cannula in mm" -CA concentration [mg/mL],"Contrast agent concentration in mg/mL" -Infusion rate [uL/min],"Contrast agent infusion rate in uL/min" -Infusion volume [uL],"Contrast agent infusion volume in uL" -Infusion location,"lateral ventricle/cisterna magna. Anatomical location where the infusion was performed" -Infusion start at subscan,"start button in the pump was pressed before this subscan" -Maintenance infusion rate [uL/min],"Contrast agent additional infusion rate kept during the whole experiment after final volume was reached in uL/min" -Mouse comments,"Comments relevant to the subject and/or the experiment" -Research_group_University,"University affiliation of the group who collected the data (e.g., UZH; see glossary)" -Research_group_Abbreviation,"Abbreviation describing the group who collected the data (e.g., TIG; see glossary)" -Year,"Year of collection YYYY" -Month,"Month of collection (Jan, Feb, Mar, etc)" -Date_of_acquisition,"DD/MM/YYYY" -Data_type,"Abbreviation describing the type of data collected (e.g., SRµCT; see glossary)" -Dataproject_ID,"(optional) Identifier of the project from which the data package derives, e.g., In Vivo CSF" -Facility_proposal_ID,"(optional) Number of the proposal for facility usage e.g., the beamline numbers" -Facility_institution,"Name or acronym of the institution hosting the main facility (it can be the same as University)" -Facility_country,"Country where the facility is located" -Facility_name,"Name or acronym of the main facility (e.g., CLS, SPring-8,etc)" -Facility_subunit,"(optional) Additional facility information (e.g., beamline)" \ No newline at end of file diff --git a/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Scan_list_Facility_month_YYYY_codebook_proposal.csv b/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Scan_list_Facility_month_YYYY_codebook_proposal.csv deleted file mode 100644 index c068d6b..0000000 --- a/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Scan_list_Facility_month_YYYY_codebook_proposal.csv +++ /dev/null @@ -1,15 +0,0 @@ -Variable,Description -SubjectID,"Mice unique identifier" -Condition,"alive/dead" -University,"University affiliation of the group who collected the data (e.g., UZH; see glossary)" -Research_group,"Abbreviation describing the group who collected the data (e.g., TIG; see glossary)" -Year,"Year of collection YYYY" -Month,"Month of collection (Jan, Feb, Mar, etc)" -Date_acquisition,"DD/MM/YYYY" -Data_type,"Abbreviation describing the type of data collected (e.g., SRµCT; see glossary)" -Dataproject_ID,"(optional) Identifier of the project from which the data package derives, e.g., In Vivo CSF" -Facility_proposal_ID,"(optional) Number of the proposal for facility usage e.g., the beamline numbers" -Facility_institution,"Name or acronym of the institution hosting the main facility (it can be the same as University)" -Facility_country,"Country where the facility is located" -Facility_name,"Name or acronym of the main facility (e.g., CLS, SPring-8,etc)" -Facility_sub,"(optional) Additional facility information (e.g., beamline)" diff --git a/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Scan_list_Synchrotron_YYYY_Month.csv b/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Scan_list_Synchrotron_YYYY_Month.csv deleted file mode 100644 index 2f2450b..0000000 --- a/webpage_contents/templates/templates_for_experiments/Facility_YYYY_month/metadata_tables/Scan_list_Synchrotron_YYYY_Month.csv +++ /dev/null @@ -1 +0,0 @@ -Preview_Image,Preview_Image_SliceNumber,Acquisition_Date,SubjectID,Filename,File_naming_changes,Number_of_subscans,Notes,Scan_in-vivo_or_post-mortem_or_ex-vivo,Scan_wild-type_or_diseased,Tomography_acquisition_scheme,Tomography_scan_type,Repository,Repository_URL,DiskID_Projections,DiskID_Reconstructions,Disk_Basel_Physical_Location,Disk_Bern_Physical_Location,Disk_Zurich_Physical_Location,Experiment_in-vivo_or_post-mortem_or_ex-vivo,Mean_photon_energy,Monochromator,Effective_voxel_size,Projections_Pixel_Array_Height,Projections_Pixel_Array_Width,Field_of_View_width,Field_of_View_height,Exposure_time,Overhead_time_per_projection,Number_of_projections,Stage_rotation_range,Propagation_Distance,Detector_model,Detector_Pixel_size,Detector_Pixel_Array_Height,Detector_Pixel_Array_Width,Lens_Type,Lens_F-number,Lens_Numerical_Aperture,Scintillator,Radiation_dose_rate,Synchrotron,Beamline,Country,Beamtime_start_date_YYYY_MM_DD,Beamtime_proposal_number,Beamtime_description,Image-Filter_Paganin_Delta-Beta-Ratio -- GitLab