From 6603247878fa7bd63827c86323a839bd44a790e8 Mon Sep 17 00:00:00 2001 From: Willy Kuo <willy.kuo@physiol.uzh.ch> Date: Tue, 1 Oct 2024 17:38:03 +0200 Subject: [PATCH] Put missing links to thumbnails back to scanlist tables --- .../metadata_tables/Scan_list_CLS_2023_November.csv | 2 +- .../metadata_tables/Scan_list_ESRF_2021_November.csv | 12 ++++++------ .../metadata_tables/Scan_list_SPring-8_2023_May.csv | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-) diff --git a/webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Scan_list_CLS_2023_November.csv b/webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Scan_list_CLS_2023_November.csv index fee9271..f3f3b11 100644 --- a/webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Scan_list_CLS_2023_November.csv +++ b/webpage_contents/experiments/synchrotron_microCT/CLS_2023_November/metadata_tables/Scan_list_CLS_2023_November.csv @@ -1,2 +1,2 @@ Preview_Image_LowQuality,Preview_Image_Slice_Number,Date,Subject_ID,Tissue_ID,Anatomical_location,Filename,Filename_changes,Number_of_subscans_in_file,Comments,Preparation,Strain,Genetic_strain_type,Pathology,Tomography_acquisition_scheme,Tomography_scan_type,Repository,Repository_URL,Mean_photon_energy,Monochromator,Effective_voxel_size,Projections_width_in_pixel,Projections_height_in_pixel,Projections_width,Projections_height,Exposure_time,Overhead_time_per_projection,Number_of_projections,Stage_rotation_angle_range,Stage_position_z,Height_step_size,Propagation_distance,Detector_model,Detector_pixel_size,Detector_width_in_pixel,Detector_height_in_pixel,Lens_type,Lens_f-number,Lens_numerical_aperture,Scintillator,Radiation_dose_rate,Facility_name,Facility_subunit,Facility_institution,Facility_country,Beamtime_start_date,Beamtime_proposal_number,Beamtime_project_description,Disk_ID_Projections,Disk_ID_Reconstructions,Disk_Basel_Physical_Location,Disk_Bern_Physical_Location,Disk_Zurich_Physical_Location,Research_group_institution,Research_group,Table_date_csv_export -,490,2023-11-26,CA019,N/A,brain,subjCA019/scan002_time-steps,N/A,50,,in vivo,C57BL/6J,wild-type,healthy,standard tomography,time series,N/A,N/A,37.8 keV,Double crystal monochromator,8 µm,2048,1200,16.4 mm,9.6 mm,15 ms,2 ms,2000,180 °,N/A,N/A,600 mm,pco.edge 5.5,6.5 µm,2560,2160,Macro lens,,N/A,,2 Gy/s,CLS,BMIT,N/A,Canada,2023-11-21,38G13327,CSF time-resolved,CLS_Nov2023_Disk1,CLS_Nov2023_Disk3,laboratory cupboard,office cupboard,Y23 J78; Box 1; Slots 3 & 5 ,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-09-30 +subjCA019_scan002_time-steps.jpg,490,2023-11-26,CA019,N/A,brain,subjCA019/scan002_time-steps,N/A,50,,in vivo,C57BL/6J,wild-type,healthy,standard tomography,time series,N/A,N/A,37.8 keV,Double crystal monochromator,8 µm,2048,1200,16.4 mm,9.6 mm,15 ms,2 ms,2000,180 °,N/A,N/A,600 mm,pco.edge 5.5,6.5 µm,2560,2160,Macro lens,,N/A,,2 Gy/s,CLS,BMIT,N/A,Canada,2023-11-21,38G13327,CSF time-resolved,CLS_Nov2023_Disk1,CLS_Nov2023_Disk3,laboratory cupboard,office cupboard,Y23 J78; Box 1; Slots 3 & 5 ,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-10-01 diff --git a/webpage_contents/experiments/synchrotron_microCT/ESRF_2021_November/metadata_tables/Scan_list_ESRF_2021_November.csv b/webpage_contents/experiments/synchrotron_microCT/ESRF_2021_November/metadata_tables/Scan_list_ESRF_2021_November.csv index cf760b6..365555b 100644 --- a/webpage_contents/experiments/synchrotron_microCT/ESRF_2021_November/metadata_tables/Scan_list_ESRF_2021_November.csv +++ b/webpage_contents/experiments/synchrotron_microCT/ESRF_2021_November/metadata_tables/Scan_list_ESRF_2021_November.csv @@ -1,7 +1,7 @@ Preview_Image_LowQuality,Preview_Image_Slice_Number,Date,Subject_ID,Tissue_ID,Anatomical_location,Filename,Filename_changes,Number_of_subscans_in_file,Comments,Preparation,Strain,Genetic_strain_type,Pathology,Tomography_acquisition_scheme,Tomography_scan_type,Repository,Repository_URL,Mean_photon_energy,Monochromator,Effective_voxel_size,Projections_width_in_pixel,Projections_height_in_pixel,Projections_width,Projections_height,Exposure_time,Overhead_time_per_projection,Number_of_projections,Stage_rotation_angle_range,Stage_position_z,Height_step_size,Propagation_distance,Detector_model,Detector_pixel_size,Detector_width_in_pixel,Detector_height_in_pixel,Lens_type,Lens_f-number,Lens_numerical_aperture,Scintillator,Radiation_dose_rate,Facility_name,Facility_subunit,Facility_institution,Facility_country,Beamtime_start_date,Beamtime_proposal_number,Beamtime_project_description,Disk_ID_Projections,Disk_ID_Reconstructions,Disk_Basel_Physical_Location,Disk_Bern_Physical_Location,Disk_Zurich_Physical_Location,Research_group_institution,Research_group,Table_date_csv_export -,408,2021-11-19,Mouse17,N/A,brain,All_2k/Mouse17_male_live_23p7_0p5ulmin_5ul_2k_h2,N/A,1,,in vivo,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-09-30 -,408,2021-11-19,Mouse17,N/A,brain,Mouse17_male_live_23p7_0p5ulmin_5ul_60k360_h2,N/A,1,20 reconstructed time delays,in vivo,C57BL/6J,wild-type,healthy,standard tomography,gated scan,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,60000,360 °,N/A,N/A,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-09-30 -,536,2021-11-19,Mouse19,N/A,brain ,All_2k/Mouse19_male_live_26p9_noCA_2k_h1,N/A,1,2 reconstructed delta/beta,in vivo,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,ESRF_MD1230_disk2,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-09-30 -,525,2021-11-20,Mouse21,N/A,brain,All_2k/Mouse21_male_live_25p3_0p1ulmin_Xul_2k_h2,N/A,1,,in vivo,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-09-30 -,425,2021-11-20,Mouse21,N/A,brain,All_2k/Mouse21_male_dead_25p3_0p1ulmin_Xul_2k_h2,N/A,1,,post mortem,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-09-30 -,425,2021-11-20,Mouse21,N/A,brain,All_2k/Mouse21_male_dead_25p3_0p1ulmin_Xul_2k_h3,N/A,1,,post mortem,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-09-30 +Mouse17_male_live_23p7_0p5ulmin_5ul_2k_h2_rec__0408.jpg,408,2021-11-19,Mouse17,N/A,brain,All_2k/Mouse17_male_live_23p7_0p5ulmin_5ul_2k_h2,N/A,1,,in vivo,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-10-01 +Mouse17_male_live_23p7_0p5ulmin_5ul_60k360_h2_0408_100ms.jpg,408,2021-11-19,Mouse17,N/A,brain,Mouse17_male_live_23p7_0p5ulmin_5ul_60k360_h2,N/A,1,20 reconstructed time delays,in vivo,C57BL/6J,wild-type,healthy,standard tomography,gated scan,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,60000,360 °,N/A,N/A,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-10-01 +Mouse19_male_live_26p9_noCA_2k_h1_0536.jpg,536,2021-11-19,Mouse19,N/A,brain ,All_2k/Mouse19_male_live_26p9_noCA_2k_h1,N/A,1,2 reconstructed delta/beta,in vivo,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,ESRF_MD1230_disk2,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-10-01 +Mouse21_male_dead_25p3_0p1ulmin_Xul_2k_h2_0425.jpg,525,2021-11-20,Mouse21,N/A,brain,All_2k/Mouse21_male_live_25p3_0p1ulmin_Xul_2k_h2,N/A,1,,in vivo,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-10-01 +Mouse21_male_dead_25p3_0p1ulmin_Xul_2k_h3_0425.jpg,425,2021-11-20,Mouse21,N/A,brain,All_2k/Mouse21_male_dead_25p3_0p1ulmin_Xul_2k_h2,N/A,1,,post mortem,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-10-01 +Mouse21_male_live_25p3_0p1ulmin_Xul_2k_h2_0425.jpg,425,2021-11-20,Mouse21,N/A,brain,All_2k/Mouse21_male_dead_25p3_0p1ulmin_Xul_2k_h3,N/A,1,,post mortem,C57BL/6J,wild-type,healthy,standard tomography,height steps,ESRF Data Repository,https://data.esrf.fr/investigation/534173041/datasets,37.95 keV,Double crystal monochromator,6.3 µm,2560,780,16.5 mm,4.9 mm,5 ms,5 ms,2000,180 °,N/A,4.4 mm,3000 mm,pco.edge 5.5,6.5 µm,2560,2160,Camera lens Hasselblad 100 mm f/2.2,2.2,N/A,250 µm LuAG,3.4 Gy/s,ESRF,ID17,N/A,France,2021-11-18,MD1230,CSF gated,ESRF_ID17_inVivo_MD1230,esrf_id17_invivo_reco,laboratory cupboard,office cupboard,Y23 J78,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-10-01 diff --git a/webpage_contents/experiments/synchrotron_microCT/SPring-8_2023_May/metadata_tables/Scan_list_SPring-8_2023_May.csv b/webpage_contents/experiments/synchrotron_microCT/SPring-8_2023_May/metadata_tables/Scan_list_SPring-8_2023_May.csv index 70725bc..6ef917d 100644 --- a/webpage_contents/experiments/synchrotron_microCT/SPring-8_2023_May/metadata_tables/Scan_list_SPring-8_2023_May.csv +++ b/webpage_contents/experiments/synchrotron_microCT/SPring-8_2023_May/metadata_tables/Scan_list_SPring-8_2023_May.csv @@ -1,2 +1,2 @@ Preview_Image_LowQuality,Preview_Image_Slice_Number,Date,Subject_ID,Tissue_ID,Anatomical_location,Filename,Filename_changes,Number_of_subscans_in_file,Comments,Preparation,Strain,Genetic_strain_type,Pathology,Tomography_acquisition_scheme,Tomography_scan_type,Repository,Repository_URL,Mean_photon_energy,Monochromator,Effective_voxel_size,Projections_width_in_pixel,Projections_height_in_pixel,Projections_width,Projections_height,Exposure_time,Overhead_time_per_projection,Number_of_projections,Stage_rotation_angle_range,Stage_position_z,Height_step_size,Propagation_distance,Detector_model,Detector_pixel_size,Detector_width_in_pixel,Detector_height_in_pixel,Lens_type,Lens_f-number,Lens_numerical_aperture,Scintillator,Radiation_dose_rate,Facility_name,Facility_subunit,Facility_institution,Facility_country,Beamtime_start_date,Beamtime_proposal_number,Beamtime_project_description,Disk_ID_Projections,Disk_ID_Reconstructions,Disk_Basel_Physical_Location,Disk_Bern_Physical_Location,Disk_Zurich_Physical_Location,Research_group_institution,Research_group,Table_date_csv_export -,1060,2023-05-14,JP28,N/A,brain,JP28-invivo-5scan-phase3-postinjection-brain,N/A,5,,in vivo,C57BL/6JJmsSlc,wild-type,healthy,standard tomography,time series,N/A,N/A,40 keV,Double crystal monochromator,7.99 µm,2048,1500,16.4 mm,12 mm,5 ms,8 ms,1800,180 °,N/A,N/A,1000 mm,Hamamatsu Orca Flash 4.0,6.5 µm,2048,2048,Tandem Lens System 105 mm f/2.4 & 85 mm f/1.4,2.4,N/A,500 µm LuAG,22 Gy/s,SPring-8,BL20B2,RIKEN,Japan,2023-05-11,2023A1208,CSF time-resolved,SPring-8_May2023_Disk2,SPring-8_May2023_Disk2,laboratory cupboard,office cupboard,Y23 J78; Box 1; Slot 2,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-09-30 +JP28-invivo-5scan-phase3-postinjection-brain.jpg,1060,2023-05-14,JP28,N/A,brain,JP28-invivo-5scan-phase3-postinjection-brain,N/A,5,,in vivo,C57BL/6JJmsSlc,wild-type,healthy,standard tomography,time series,N/A,N/A,40 keV,Double crystal monochromator,7.99 µm,2048,1500,16.4 mm,12 mm,5 ms,8 ms,1800,180 °,N/A,N/A,1000 mm,Hamamatsu Orca Flash 4.0,6.5 µm,2048,2048,Tandem Lens System 105 mm f/2.4 & 85 mm f/1.4,2.4,N/A,500 µm LuAG,22 Gy/s,SPring-8,BL20B2,RIKEN,Japan,2023-05-11,2023A1208,CSF time-resolved,SPring-8_May2023_Disk2,SPring-8_May2023_Disk2,laboratory cupboard,office cupboard,Y23 J78; Box 1; Slot 2,Unibas & Unibe & UZH,BMC & TKI & TIG,2024-10-01 -- GitLab