From 3ae59baf025ef13c8f2bfc4a80eba7e8cf7b6ae4 Mon Sep 17 00:00:00 2001
From: Marta Girona Alarcon <marta.gironaalarcon@uzh.ch>
Date: Tue, 17 Sep 2024 14:25:15 +0200
Subject: [PATCH] added 2 x csv tables
---
.../Equipment_table.csv | 71 +++++++++++++++++++
.../Publication_page.qmd | 11 +++
.../exVivo_Contrast_agent_per_mouse_list.csv | 8 +++
3 files changed, 90 insertions(+)
create mode 100644 webpage_contents/publications/20240901_Marta_GironaAlarcon/Equipment_table.csv
create mode 100644 webpage_contents/publications/20240901_Marta_GironaAlarcon/exVivo_Contrast_agent_per_mouse_list.csv
diff --git a/webpage_contents/publications/20240901_Marta_GironaAlarcon/Equipment_table.csv b/webpage_contents/publications/20240901_Marta_GironaAlarcon/Equipment_table.csv
new file mode 100644
index 0000000..8f2f8cd
--- /dev/null
+++ b/webpage_contents/publications/20240901_Marta_GironaAlarcon/Equipment_table.csv
@@ -0,0 +1,71 @@
+ Product number , Device , Reference , Company , State , Manufacturing country ,Comment
+1,ECG ," BMA-200, NEE-3 ", CWE Inc. , Pennsylvania , USA ,
+2,ECG ,BioAmp FE231, ADInstruments , Dunedin , New Zealand ,Ony used in ESRF_2021_November
+3,Small animal ventilator - hutch, SAR-1000 , CWE Inc. , Pennsylvania , USA ,
+4,Circulation thermostat pump , Haake L / SAHARA PPO S5P , Thermo Fisher Scientific Inc. , Schwerte , Germany ,
+5, Flowmeter and gas mixer , EFM-4 , CWE Inc. , Pennsylvania , USA ,
+6,"Data acquisition box, BNC-to-USB, used together with LabChart ", 8/35 Series , ADInstruments , Dunedin , New Zealand ,Ony used in ESRF_2021_November
+7,"Data acquisition box, BNC-to-USB, used together with LabVIEW", DT9804 , Measurement Computing Corp. , Massachusetts , USA ,
+8,Tracheal cannula for mouse - metal , 73-2731 - OD 1.0 mm L 13 mm , Hugo Sachs Elektronik , March-Hugstetten , Germany ,
+9,Stereotaxic U-frame ," SGL M digital 68801, 68665, 68202, 68207 ", RWD Life Science Co. , Shenzen , China ,
+10, Lateral ventricle fitting tube (#1) 0.69 mm ID x 1.14 mm OD , C312VT vinyl - P1-8F027X045P01 , Bilaney Consultants GmbH , Duesseldorf , Germany ,Only used in ESRF
+11," Lateral ventricle fitting tube (#2) 0.23"" ID x 0.38"" OD ", P50 Tygon , Access Technologies , Illinois , USA ,
+12, Compression fitting 1 mm , HA-55750-01 , BGB Analytik AG , Heidelberg , Germany ,
+13, 25 uL Hamilton syringe without needle , HA-80230 , BGB Analytik AG , Heidelberg , Germany ,
+14,Single syringe I/W nanoliter pump , KDS Legato 130 , KD Scientific Inc , Holliston , USA ,
+15, MRI microcannula ," 328OP/PK/Spc 2.2, 2.3 or 2.5 mm ", Bilaney Consultants GmbH , Duesseldorf , Germany ,
+16, Dental drill , OmniDrill35 , World Precision Instruments GmbH , Friedberg , Germany ,
+17, Health monitoring device PhysioSuite ," PS-03,CBL-ANAOUT-MINI, E-RT-0002, E-RT-2-CUS, PS-05-module ", Kent Scientific Corp. , Torrington , USA ,
+18,Microcontroller board,Arduino Mega 2560,Arduino,Ivrea,Italy,Ony used in ESRF
+19," ESRF, CLS camera ", pco.edge 5.5 , PCO AG , Kelheim , Germany ,
+20, Spring-8 camera , Hamamatsu ORCA-Flash4.0 ,Hamamatsu Corp.,Bridgewater,"USA ",Only used in SPring-8
+21, Insulin syringe , Omnican 50 ,"B.Braun Melsungen AG ",Melsungen,Germany,
+22, Cisterna magna fitting tube , Polyethylene 50 /23G ,"UNO Life Solutions ","PC Zevenaar ","Netherlands ",Ony used in ESRF
+23, Cisterna magna metal clip , 00398-02 , Fine Scientific Tools Inc , Heidelberg , Germany ,Ony used in ESRF
+24, Tissue glue , VetBondTM 3M , 3M , Minnesota , USA ,
+25, Anesthesia induction chamber , V100-V , RWD Life Science Co. , Shenzen , China ,
+26, Reptile temperature controller , ITC-308 WIFI , Inkbird Tech. C.L , Shenzen , China ,
+27, Contrast agent , ExiTronTM nano12000 , ViscoverTM nanoPET Pharma GmbH , Berlin , Germany ,
+28, Monitoring software LabChart ,LabChart 8, ADInstruments , Dunedin , New Zealand ,Ony used in ESRF_2021_November
+29, Monitoring software LabVIEW ,2022 Q3, National Instruments ,Austin,"USA ",
+30, Wrap bandage - holder , KRUUSE Vet-Flex 5cm x 4.5m , Covetrus CH , Lyssach , Switzerland ,
+31, Low-Profile Anesthesia mask Small , E-VETFLO-0801 , Kent Scientific Corp. , Torrington , USA ,
+32, Superglue accelerator INSTA-SET, GTIN 707336151009 , Toni Clark GmbH , Luebbecke ,Germany,
+33,Rodent warmer X1 with mouse heating pad - surgery," 50304, 53800M, 53810 ", Stoelting Co. , New York , USA ,
+34,Grooming clipper Aesculap Exacta , GT416 , Groomers Mall GmbH , Ebmatingen , Switzerland ,
+35,Small animal ventilator - surgery, MiniVent - Model 845 , Hugo Sachs Elektronik , March-Hugstetten , Germany ,Used also in hutch for ESRF_2021_November
+36,Rotary saw,2050 Stylo+,Dremel - Robert Bosch Tool Corp.,Mount Prospect,"USA ",
+37,"1 mL syringe ", Injekt Fluer Solo 9166017V ,"B.Braun Melsungen AG "," Melsungen ","Germany ",
+38,"26 G needle "," Sterican 4670008S-01 ","B.Braun Melsungen AG "," Melsungen ","Germany ",
+39,"22 G needle "," Sterican 4670032S-01 ","B.Braun Melsungen AG "," Melsungen ","Germany ",
+40,"Lubricant eye ointment ",Blache Augensalbe Tb 5 g ,"Bausch +Lomb ", Vaughan Ontario ,"Canada ",
+41,"Bonewax "," Ehicon REF W31 ","B.Braun Melsungen AG "," Melsungen ","Germany ",
+42,"Surgical blade "," B.Braun ","Aesculap AG ","Tuttlingen ","Germany ",
+43,"Vannas Spring Scissors ", Fine Science Tools 15000-00 ,"Fine Science Tools ","Foster City CA "," USA ",
+44,"Spring Scissors - 8mm Cutting Edge ", Fine Science Tools 15025-10 ,"Fine Science Tools ","Foster City CA "," USA ",
+45,"Acrylic glue Cyano "," Cyano fast, REF 152261 ","Hager Werken ","Duisburg "," Germany ",
+46,"Surgical tape ","3M Transpore White Surgical Tape, 1534/1544 Series ","3M ","Minnesota ","USA ",
+47,"Sugi sponge points ","43.100.603 ","Curaden Dentaldepot ","Dietikon ","Switzerland ",
+48,"Sterile threaded needle ","Silkam, 6-0 DS12 45 cm, REF C0762067 ",B.Braun Melsungen AG ,"Melsungen ","Germany ",
+49,"Non-absorbable braided silk suture ","Siyze 6/0, 18020-20 ","Fine Science Tools ",Foster City CA ," USA ",
+50,"Microvascular clamps ","2 single clamps vessel size 0.6-1.5 mm, REF 00399 "," S&T AG ","Neuhausen ","Switzerland ",
+51,"Saline solution ","0.9 % NaCl ","Fresenius Kabi AG ","Oberdorf ","Switzerland ",
+52,"20 % Glucose ","2356746 ","B.Braun Melsungen AG ","Melsungen ","Germany ",
+53,"Hair removal cream ","Veet ","Reckit Benckiser ",Slough ,England,
+54,"Hardened Fine Scissors ","14090-09 ","Fine Science Tools ","Foster City CA "," USA ",
+55,"Extra Fine Graefe Forceps Straight ","11150-10 ","Fine Science Tools ","Foster City CA "," USA ",
+56,"Extra Fine Graefe Forceps Curved ","11152-10 ","Fine Science Tools ",Foster City CA ," USA ",
+57,"S&T Forceps - SuperGrip Tips ","00649-11 ","Fine Science Tools ",Foster City CA ," USA ",
+58,"Tweezers 5-SA ","5SA ","Rubistech ","Stabio ","Switzerland ",
+59,"Ball mill, carbide 0.5 mm ","115-6025 ","Circuit medic ","Haverhill, MA "," USA ",
+60,"Ball mill, carbide 0.8 mm ","115-6001 ","Circuit medic ","Haverhill, MA "," USA ",
+61,"Ball mill, carbide 1.0 mm ","115-6002 ","Cicuit medic ","Haverhill, MA "," USA ",
+62,"Ball mill, carbide 1.2 mm ","115-6003 ","Circuit medic ","Haverhill, MA "," USA ",
+63,"Non-woven swabs ","V0043-010 Nobatop 16 ","Nobamed Paul Danz AG ","Wetter (Ruhr) "," Germany ",
+64,"Mathieu Needle Holders ","12010-14 ","Fine Science Tools ",Foster City CA ," USA ",
+65,"Student Halsey Needle Holder ","91201-13 ","Fine Science Tools ",Foster City CA ," USA ",
+66,"Fiberoptic Gooseneck light guide ","Photonic ","Photonic Optics ",Vienna,Austria,
+67,"Light source PL 2000 ","596-20-250 ","Photonic Optics ",Vienna,Austria,
+68,"Heating pad ","465265 ","ThermoLux ","Murrhardt ","Germany ",
+69,"Cisterna magna Polyurethane tubing French 2 0.012 "" ID "," BC-2P ","UNO Life Solutions ","PC Zevenaar ","Netherlands ",Only used in ESRF
+70,"Cotton applicator small head ","REF 1001230 Boettger ","Applimed SA ",Chatel-St-Denis ,Switzerland ,
diff --git a/webpage_contents/publications/20240901_Marta_GironaAlarcon/Publication_page.qmd b/webpage_contents/publications/20240901_Marta_GironaAlarcon/Publication_page.qmd
index 7f3c3b7..25fa082 100644
--- a/webpage_contents/publications/20240901_Marta_GironaAlarcon/Publication_page.qmd
+++ b/webpage_contents/publications/20240901_Marta_GironaAlarcon/Publication_page.qmd
@@ -31,6 +31,8 @@ The list of used contrast agents is available under the Zenodo download entry "t
*Fig. 2. Ex vivo coronal slices of three different mice injected with (left) Gadolinium-based, (middle) Barium-based and (right) Gold-based contrast agent*
+We considered the Barium-based contrast agent (CA) to be the most promissing one and therefore decided to employ it for the *in vivo* experiments.
+
### Experiment 2: CSF spaces segmentation
{width="600"}
@@ -51,7 +53,16 @@ Three dimensional rendering of CSF spaces enclosed in the mouse skull: Infusion
## Additional materials
+We have additively manufactured the mouse holder, optimized for vertical imaging while ensuring fixation of the mouse skull.
+
+*Fig. X. *
+
+
+
+###
Equipment and consumables are provided as a table:
+
+
<table>
<tr>
<td> Product number </td>
diff --git a/webpage_contents/publications/20240901_Marta_GironaAlarcon/exVivo_Contrast_agent_per_mouse_list.csv b/webpage_contents/publications/20240901_Marta_GironaAlarcon/exVivo_Contrast_agent_per_mouse_list.csv
new file mode 100644
index 0000000..71b34cf
--- /dev/null
+++ b/webpage_contents/publications/20240901_Marta_GironaAlarcon/exVivo_Contrast_agent_per_mouse_list.csv
@@ -0,0 +1,8 @@
+Mouse number,Element,Molecular Weight,Injection Site,Contrast agent commercial name
+21,Iodine,High MW,ventricle,ExiTron P
+23,Gadolinium,High MW,ventricle,GadoSpin P
+24,Gold,Nanoparticles,ventricle,Aurovist 15 nm
+22,Gadolinium,Low MW,ventricle,Gadodiamide
+19,Barium,Nanoparticles,ventricle,ExiTron nano 12000
+30,Gold,Nanoparticles,cisterna magna,Aurovist 15 nm
+25,Barium,Nanoparticles,cisterna magna,ExiTron nano 12000
--
GitLab