diff --git a/webpage_contents/publications/20240901_Marta_GironaAlarcon/Equipment_table.csv b/webpage_contents/publications/20240901_Marta_GironaAlarcon/Equipment_table.csv new file mode 100644 index 0000000000000000000000000000000000000000..8f2f8cd9b74a84a6725f7d0be353ea088864f0b5 --- /dev/null +++ b/webpage_contents/publications/20240901_Marta_GironaAlarcon/Equipment_table.csv @@ -0,0 +1,71 @@ + Product number , Device , Reference , Company , State , Manufacturing country ,Comment +1,ECG ," BMA-200, NEE-3 ", CWE Inc. , Pennsylvania , USA , +2,ECG ,BioAmp FE231, ADInstruments , Dunedin , New Zealand ,Ony used in ESRF_2021_November +3,Small animal ventilator - hutch, SAR-1000 , CWE Inc. , Pennsylvania , USA , +4,Circulation thermostat pump , Haake L / SAHARA PPO S5P , Thermo Fisher Scientific Inc. , Schwerte , Germany , +5, Flowmeter and gas mixer , EFM-4 , CWE Inc. , Pennsylvania , USA , +6,"Data acquisition box, BNC-to-USB, used together with LabChart ", 8/35 Series , ADInstruments , Dunedin , New Zealand ,Ony used in ESRF_2021_November +7,"Data acquisition box, BNC-to-USB, used together with LabVIEW", DT9804 , Measurement Computing Corp. , Massachusetts , USA , +8,Tracheal cannula for mouse - metal , 73-2731 - OD 1.0 mm L 13 mm , Hugo Sachs Elektronik , March-Hugstetten , Germany , +9,Stereotaxic U-frame ," SGL M digital 68801, 68665, 68202, 68207 ", RWD Life Science Co. , Shenzen , China , +10, Lateral ventricle fitting tube (#1) 0.69 mm ID x 1.14 mm OD , C312VT vinyl - P1-8F027X045P01 , Bilaney Consultants GmbH , Duesseldorf , Germany ,Only used in ESRF +11," Lateral ventricle fitting tube (#2) 0.23"" ID x 0.38"" OD ", P50 Tygon , Access Technologies , Illinois , USA , +12, Compression fitting 1 mm , HA-55750-01 , BGB Analytik AG , Heidelberg , Germany , +13, 25 uL Hamilton syringe without needle , HA-80230 , BGB Analytik AG , Heidelberg , Germany , +14,Single syringe I/W nanoliter pump , KDS Legato 130 , KD Scientific Inc , Holliston , USA , +15, MRI microcannula ," 328OP/PK/Spc 2.2, 2.3 or 2.5 mm ", Bilaney Consultants GmbH , Duesseldorf , Germany , +16, Dental drill , OmniDrill35 , World Precision Instruments GmbH , Friedberg , Germany , +17, Health monitoring device PhysioSuite ," PS-03,CBL-ANAOUT-MINI, E-RT-0002, E-RT-2-CUS, PS-05-module ", Kent Scientific Corp. , Torrington , USA , +18,Microcontroller board,Arduino Mega 2560,Arduino,Ivrea,Italy,Ony used in ESRF +19," ESRF, CLS camera ", pco.edge 5.5 , PCO AG , Kelheim , Germany , +20, Spring-8 camera , Hamamatsu ORCA-Flash4.0 ,Hamamatsu Corp.,Bridgewater,"USA ",Only used in SPring-8 +21, Insulin syringe , Omnican 50 ,"B.Braun Melsungen AG ",Melsungen,Germany, +22, Cisterna magna fitting tube , Polyethylene 50 /23G ,"UNO Life Solutions ","PC Zevenaar ","Netherlands ",Ony used in ESRF +23, Cisterna magna metal clip , 00398-02 , Fine Scientific Tools Inc , Heidelberg , Germany ,Ony used in ESRF +24, Tissue glue , VetBondTM 3M , 3M , Minnesota , USA , +25, Anesthesia induction chamber , V100-V , RWD Life Science Co. , Shenzen , China , +26, Reptile temperature controller , ITC-308 WIFI , Inkbird Tech. C.L , Shenzen , China , +27, Contrast agent , ExiTronTM nano12000 , ViscoverTM nanoPET Pharma GmbH , Berlin , Germany , +28, Monitoring software LabChart ,LabChart 8, ADInstruments , Dunedin , New Zealand ,Ony used in ESRF_2021_November +29, Monitoring software LabVIEW ,2022 Q3, National Instruments ,Austin,"USA ", +30, Wrap bandage - holder , KRUUSE Vet-Flex 5cm x 4.5m , Covetrus CH , Lyssach , Switzerland , +31, Low-Profile Anesthesia mask Small , E-VETFLO-0801 , Kent Scientific Corp. , Torrington , USA , +32, Superglue accelerator INSTA-SET, GTIN 707336151009 , Toni Clark GmbH , Luebbecke ,Germany, +33,Rodent warmer X1 with mouse heating pad - surgery," 50304, 53800M, 53810 ", Stoelting Co. , New York , USA , +34,Grooming clipper Aesculap Exacta , GT416 , Groomers Mall GmbH , Ebmatingen , Switzerland , +35,Small animal ventilator - surgery, MiniVent - Model 845 , Hugo Sachs Elektronik , March-Hugstetten , Germany ,Used also in hutch for ESRF_2021_November +36,Rotary saw,2050 Stylo+,Dremel - Robert Bosch Tool Corp.,Mount Prospect,"USA ", +37,"1 mL syringe ", Injekt Fluer Solo 9166017V ,"B.Braun Melsungen AG "," Melsungen ","Germany ", +38,"26 G needle "," Sterican 4670008S-01 ","B.Braun Melsungen AG "," Melsungen ","Germany ", +39,"22 G needle "," Sterican 4670032S-01 ","B.Braun Melsungen AG "," Melsungen ","Germany ", +40,"Lubricant eye ointment ",Blache Augensalbe Tb 5 g ,"Bausch +Lomb ", Vaughan Ontario ,"Canada ", +41,"Bonewax "," Ehicon REF W31 ","B.Braun Melsungen AG "," Melsungen ","Germany ", +42,"Surgical blade "," B.Braun ","Aesculap AG ","Tuttlingen ","Germany ", +43,"Vannas Spring Scissors ", Fine Science Tools 15000-00 ,"Fine Science Tools ","Foster City CA "," USA ", +44,"Spring Scissors - 8mm Cutting Edge ", Fine Science Tools 15025-10 ,"Fine Science Tools ","Foster City CA "," USA ", +45,"Acrylic glue Cyano "," Cyano fast, REF 152261 ","Hager Werken ","Duisburg "," Germany ", +46,"Surgical tape ","3M Transpore White Surgical Tape, 1534/1544 Series ","3M ","Minnesota ","USA ", +47,"Sugi sponge points ","43.100.603 ","Curaden Dentaldepot ","Dietikon ","Switzerland ", +48,"Sterile threaded needle ","Silkam, 6-0 DS12 45 cm, REF C0762067 ",B.Braun Melsungen AG ,"Melsungen ","Germany ", +49,"Non-absorbable braided silk suture ","Siyze 6/0, 18020-20 ","Fine Science Tools ",Foster City CA ," USA ", +50,"Microvascular clamps ","2 single clamps vessel size 0.6-1.5 mm, REF 00399 "," S&T AG ","Neuhausen ","Switzerland ", +51,"Saline solution ","0.9 % NaCl ","Fresenius Kabi AG ","Oberdorf ","Switzerland ", +52,"20 % Glucose ","2356746 ","B.Braun Melsungen AG ","Melsungen ","Germany ", +53,"Hair removal cream ","Veet ","Reckit Benckiser ",Slough ,England, +54,"Hardened Fine Scissors ","14090-09 ","Fine Science Tools ","Foster City CA "," USA ", +55,"Extra Fine Graefe Forceps Straight ","11150-10 ","Fine Science Tools ","Foster City CA "," USA ", +56,"Extra Fine Graefe Forceps Curved ","11152-10 ","Fine Science Tools ",Foster City CA ," USA ", +57,"S&T Forceps - SuperGrip Tips ","00649-11 ","Fine Science Tools ",Foster City CA ," USA ", +58,"Tweezers 5-SA ","5SA ","Rubistech ","Stabio ","Switzerland ", +59,"Ball mill, carbide 0.5 mm ","115-6025 ","Circuit medic ","Haverhill, MA "," USA ", +60,"Ball mill, carbide 0.8 mm ","115-6001 ","Circuit medic ","Haverhill, MA "," USA ", +61,"Ball mill, carbide 1.0 mm ","115-6002 ","Cicuit medic ","Haverhill, MA "," USA ", +62,"Ball mill, carbide 1.2 mm ","115-6003 ","Circuit medic ","Haverhill, MA "," USA ", +63,"Non-woven swabs ","V0043-010 Nobatop 16 ","Nobamed Paul Danz AG ","Wetter (Ruhr) "," Germany ", +64,"Mathieu Needle Holders ","12010-14 ","Fine Science Tools ",Foster City CA ," USA ", +65,"Student Halsey Needle Holder ","91201-13 ","Fine Science Tools ",Foster City CA ," USA ", +66,"Fiberoptic Gooseneck light guide ","Photonic ","Photonic Optics ",Vienna,Austria, +67,"Light source PL 2000 ","596-20-250 ","Photonic Optics ",Vienna,Austria, +68,"Heating pad ","465265 ","ThermoLux ","Murrhardt ","Germany ", +69,"Cisterna magna Polyurethane tubing French 2 0.012 "" ID "," BC-2P ","UNO Life Solutions ","PC Zevenaar ","Netherlands ",Only used in ESRF +70,"Cotton applicator small head ","REF 1001230 Boettger ","Applimed SA ",Chatel-St-Denis ,Switzerland , diff --git a/webpage_contents/publications/20240901_Marta_GironaAlarcon/Publication_page.qmd b/webpage_contents/publications/20240901_Marta_GironaAlarcon/Publication_page.qmd index 7f3c3b761ddab77218eb2b9ebaad57a008d17a59..25fa08259b181da3af68fef17bbc99ed9beed102 100644 --- a/webpage_contents/publications/20240901_Marta_GironaAlarcon/Publication_page.qmd +++ b/webpage_contents/publications/20240901_Marta_GironaAlarcon/Publication_page.qmd @@ -31,6 +31,8 @@ The list of used contrast agents is available under the Zenodo download entry "t  *Fig. 2. Ex vivo coronal slices of three different mice injected with (left) Gadolinium-based, (middle) Barium-based and (right) Gold-based contrast agent* +We considered the Barium-based contrast agent (CA) to be the most promissing one and therefore decided to employ it for the *in vivo* experiments. + ### Experiment 2: CSF spaces segmentation {width="600"} @@ -51,7 +53,16 @@ Three dimensional rendering of CSF spaces enclosed in the mouse skull: Infusion ## Additional materials +We have additively manufactured the mouse holder, optimized for vertical imaging while ensuring fixation of the mouse skull. + +*Fig. X. * + + + +### Equipment and consumables are provided as a table: + + <table> <tr> <td> Product number </td> diff --git a/webpage_contents/publications/20240901_Marta_GironaAlarcon/exVivo_Contrast_agent_per_mouse_list.csv b/webpage_contents/publications/20240901_Marta_GironaAlarcon/exVivo_Contrast_agent_per_mouse_list.csv new file mode 100644 index 0000000000000000000000000000000000000000..71b34cf5667d18c879c4fbed3537ed89dc81b004 --- /dev/null +++ b/webpage_contents/publications/20240901_Marta_GironaAlarcon/exVivo_Contrast_agent_per_mouse_list.csv @@ -0,0 +1,8 @@ +Mouse number,Element,Molecular Weight,Injection Site,Contrast agent commercial name +21,Iodine,High MW,ventricle,ExiTron P +23,Gadolinium,High MW,ventricle,GadoSpin P +24,Gold,Nanoparticles,ventricle,Aurovist 15 nm +22,Gadolinium,Low MW,ventricle,Gadodiamide +19,Barium,Nanoparticles,ventricle,ExiTron nano 12000 +30,Gold,Nanoparticles,cisterna magna,Aurovist 15 nm +25,Barium,Nanoparticles,cisterna magna,ExiTron nano 12000