Synchrotron microCT

Go to beamtime pages

Date Title First author Last author
May 1, 2023 SPring-8    
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Beamtime grand table

Code
library(DT)
library(openxlsx)

table <- openxlsx::read.xlsx(xlsxFile = 'BeamtimeGrandTable.xlsx',sheet = 'Resources')
code  <- openxlsx::read.xlsx(xlsxFile = 'BeamtimeGrandTable.xlsx',sheet = 'Codebook')


DT::datatable(table,filter = "top" )

Variable codebook

Code
library(kableExtra)

kable(code, format = "markdown")
Variable_name Description Description_abbreviation
Year Year from AFFORD project in which activities took place NA
Partner AFFORD partner team (TIG: the interface group; CRS: Center for Reproducible Science) NA
Collaborator Surname of the main person(s) executing the actions NA
Facility_1 country where data were collected NA
Facility_2 name of synchrotron facility NA
Facility_country name of experimental facilities of a synchrotron particle accelerator NA
Acquisition_start_date DD-MM-YYYY date of the official first day of the beamtime allocated for the experiment. Internally within the Sinergia project, beamtime experiments are often informally identified by the month and year they took place. NA
Acquisition_proposal_number Identification number of the synchrotron beamtime proposal. This number helps identifying the beamtime experiment at the different facilities NA
Acquisition_data_type Contains a shorthand for the scientific purpose for which the data was collected. Typically corresponds to the official project associated with a given beamtime experiment, or is given as “General” NA
Execution_period Whether the activite was conducted before, during (offsite or onsite) or after data acquisition NA
Purpose Goals of the task; Data Sharing and Publishing: open research data and metadata curation, documentation and publishing; Internal Documentation: Activities related to documenting data internally, minimum curation for internal sharing; Data and File Management: file operations and internal documentation that would need to be done even if no data publication was envisioned; Data Stewardship: helping other groups or researchers setting up similar activities; Supporting Documentation : writing more generic documentation on how-to perform some actions; NA
Action Specific actions performed NA
Action_sub Sub action when applicable (else N/A) NA
Description Free text describing details about the activity NA
Comments Free text describing details about the activity NA
Active_time_h Time needed for task spent in action, requiring active work by a person NA
Waiting_time_h Time needed for task that does not include any active work from project partners. Most commonly computer busy time (e.g. waiting for file transfer, processing etc.), but may also include waiting for external parties (e.g. IT support) NA
Time_monitoring prospective: start of task was anticipated and time tracking was started, giving precise time information. Retrospective: action was already finished when time requirement was calculated, giving only rough estimates NA
Abbreviation arcAbeta genetically modified mouse strain, model for Alzheimer’s
Abbreviation EtOH ethanol
Abbreviation BMC Biomaterials Science Center, Sinergia partner in Basel under Prof. Bert Müller
Abbreviation TKI Theodor-Kocher-Institute, Sinergia partner in Bern under Prof. Britta Engelhardt or Steven Proulx
Abbreviation EAE Experimental autoimmune encephalomyelitis, an animal model for multiple sclerosis
Abbreviation CSF cerebrospinal fluid
Abbreviation TiB Tebibyte. unit of data storage equal to 2^40 or 1,099,511,627,776 bytes
Abbreviation BIDS brain imaging data structure - a metadata standard for neuroimaging data of multiple modalities
Abbreviation SHA256 hash functions computed with eight 32-bit words
Abbreviation N/A not applicable
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