Explore projects

IMMense (IMM Extended Nextflow Sequencing Environment) is a Nextflow pipeline to analyze bacterial and fungal genomes. It covers genome assembly and annotation, species identification, resistance and virulence gene analysis as well as specific modules for selected species. The pipeline's strenghts are reproducible results by using singularity containers and a thorough quality control. IMMense can be deployed single machines as well as HPC clusters.

Contains scripts for converting UZH CL corpora from XML format to a standardised PaCoCo format.

https://app.connect.uzh.ch/apps/id/kurse.nsf/kursleitendeveranstaltung.xsp?openxpage&documentId=DF26924176AE8473C125865400668E78&action=readDocument

https://app.connect.uzh.ch/apps/id/kurse.nsf/veranstaltung.xsp?openxpage&documentId=E159C107CEB44333C12585A50034CD2C&action=readDocument

A public landing point to and source of information about the research group of Simon Aeschbacher.

atomic orbital basis truncation on RT- or LR-TDHF/DFT

PLUMED2 with DeepCV