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This project is home to the OpenTofu CI/CD component and it's related assets, like the gitlab-tofu wrapper script and OCI images containing that script together with an OpenTofu version.

IMMense (IMM Extended Nextflow Sequencing Environment) is a Nextflow pipeline to analyze bacterial and fungal genomes. It covers genome assembly and annotation, species identification, resistance and virulence gene analysis as well as specific modules for selected species. The pipeline's strenghts are reproducible results by using singularity containers and a thorough quality control. IMMense can be deployed single machines as well as HPC clusters.

Preprocessing and Encoding for the Corpus Workbench (CWB).

Credit: Niclas Linus Bodenmann

Secret Detection scans your repository to help prevent your secrets from being exposed.

Preprocessing and Encoding for the Corpus Workbench (CWB).