From e392bd477c0d700000f196b326ff5c057cb1d351 Mon Sep 17 00:00:00 2001 From: Srinithi Purushothaman <spurushothaman@imm.uzh.ch> Date: Wed, 22 Mar 2023 13:01:27 +0100 Subject: [PATCH] Update file qc_exercise.md --- exercises/qc_exercise.md | 12 ++---------- 1 file changed, 2 insertions(+), 10 deletions(-) diff --git a/exercises/qc_exercise.md b/exercises/qc_exercise.md index 44860ac..b201037 100644 --- a/exercises/qc_exercise.md +++ b/exercises/qc_exercise.md @@ -1,16 +1,8 @@ # Quality Control (QC) Exercises -This document has the path for the sequencing data to be copied for the exercises. +This document has the path for the sequencing summary files to be copied for the exercises. -## Absolute path for raw data and files - -`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_mrsa` - raw fastq files for mrsa from illumina - -`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_upec/` - raw fastq files for upec from illumina - -`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/rawdata_mrsa/` - raw fastq files for mrsa from nanopore - -`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/rawdata_upec/` - raw fastq files foe upec from nanopore +## Absolute path for sequencing summary files `/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/sequencing_summary_FAS74008_3919db7b_5086a1cb.txt` - seq summary file for mrsa qc -- GitLab