diff --git a/exercises/qc_exercise.md b/exercises/qc_exercise.md index 44860ac10dfa2a3d7a9899a3b1e1bbad75d653bc..b20103758ec61106a8ade9ef374cd6249ab339c5 100644 --- a/exercises/qc_exercise.md +++ b/exercises/qc_exercise.md @@ -1,16 +1,8 @@ # Quality Control (QC) Exercises -This document has the path for the sequencing data to be copied for the exercises. +This document has the path for the sequencing summary files to be copied for the exercises. -## Absolute path for raw data and files - -`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_mrsa` - raw fastq files for mrsa from illumina - -`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_upec/` - raw fastq files for upec from illumina - -`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/rawdata_mrsa/` - raw fastq files for mrsa from nanopore - -`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/rawdata_upec/` - raw fastq files foe upec from nanopore +## Absolute path for sequencing summary files `/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/sequencing_summary_FAS74008_3919db7b_5086a1cb.txt` - seq summary file for mrsa qc