From a571ec3aece88b7256fddeb206a1a7bd0bc34635 Mon Sep 17 00:00:00 2001
From: Fanny Wegner <fwegner@imm.uzh.ch>
Date: Thu, 30 Mar 2023 14:53:12 +0200
Subject: [PATCH] Update file phylo_exercise.md

---
 exercises/phylo_exercise.md | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/exercises/phylo_exercise.md b/exercises/phylo_exercise.md
index c1bb4c9..4867220 100644
--- a/exercises/phylo_exercise.md
+++ b/exercises/phylo_exercise.md
@@ -203,10 +203,13 @@ Change the variables to your needs.
 
 
 
-### DOWNLOAD TREE FILES
+### DOWNLOAD RESULTS
 
 The complete output for the SNP calling, MSA and tree can be found here, download it into a `[target_directory]` of your choice. 
 
+In every snippy folder you will find a folder called `iqtree` containing the phylogenetic tree (the .tre file). 
+
+
 ```bash
 # Typestrain as reference
 cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/03_output_mrsa/snippy_ref_typestrain [target_directory]
-- 
GitLab