From a48bdb75de5781974d5877e11309d1d8141ebf8b Mon Sep 17 00:00:00 2001 From: Srinithi Purushothaman <spurushothaman@imm.uzh.ch> Date: Wed, 22 Mar 2023 12:53:43 +0100 Subject: [PATCH] Update file qc_exercise.md --- exercises/qc_exercise.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/exercises/qc_exercise.md b/exercises/qc_exercise.md index 62be9ed..baf4d2c 100644 --- a/exercises/qc_exercise.md +++ b/exercises/qc_exercise.md @@ -4,17 +4,17 @@ This document has the path for the sequencing data to be copied for the exercise ## Absolute path for raw data and files -/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_mrsa - raw fastq files for mrsa from illumina +`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_mrsa` - raw fastq files for mrsa from illumina -/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_upec/ - raw fastq files for upec from illumina +`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_upec/` - raw fastq files for upec from illumina -/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/rawdata_mrsa/ - raw fastq files for mrsa from nanopore +`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/rawdata_mrsa/` - raw fastq files for mrsa from nanopore -/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/rawdata_upec/ - raw fastq files foe upec from nanopore +`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/rawdata_upec/` - raw fastq files foe upec from nanopore -/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/sequencing_summary_FAS74008_3919db7b_5086a1cb.txt - seq summary file for mrsa qc +`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/sequencing_summary_FAS74008_3919db7b_5086a1cb.txt` - seq summary file for mrsa qc -/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/sequencing_summary_FAS66307_6bec0f82_c8f87af5.txt - seq summary file for upec qc +`/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/sequencing_summary_FAS66307_6bec0f82_c8f87af5.txt` - seq summary file for upec qc ## Path for QC script -- GitLab