From a39a1acc185ebb6613e64132e87d17e50f9c57d9 Mon Sep 17 00:00:00 2001
From: Fanny Wegner <fwegner@imm.uzh.ch>
Date: Fri, 24 Mar 2023 08:40:56 +0100
Subject: [PATCH] Update file assembly_exercise.md

---
 exercises/assembly_exercise.md | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/exercises/assembly_exercise.md b/exercises/assembly_exercise.md
index 814c8d6..50d4f28 100644
--- a/exercises/assembly_exercise.md
+++ b/exercises/assembly_exercise.md
@@ -107,6 +107,27 @@ The scripts here, include the assembly as well as the annotation step.
 
 
 
+## Download assembly data if yours hasn't finished
+
+**Illumina**
+
+```bash
+cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/03_output_mrsa /data/$USER/ngs/illumina/03_output_mrsa_backup/
+
+cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/03_output_upec /data/$USER/ngs/illumina/03_output_upec_backup/
+```
+
+
+**Nanopore**
+
+```bash
+cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore_backup/Analysis /data/$USER/ngs/nanopore/Analysis_backup
+
+cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore_backup/QC /data/$USER/ngs/nanopore/QC_backup
+```
+
+
+
 
 
 
-- 
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