diff --git a/exercises/assembly_exercise.md b/exercises/assembly_exercise.md index 97db07c727632a197ad7f4eda83e8f86efeffc05..5dbcf8b861e0c29ebee11a030ea19932b0585dd1 100644 --- a/exercises/assembly_exercise.md +++ b/exercises/assembly_exercise.md @@ -57,10 +57,6 @@ cp -r /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_d ``` - - - - ### Running the analysis In the assembly scripts you need to specify the variables for the input and output data. @@ -74,6 +70,9 @@ Submit for each platform the respective assembly script. * In your `data` space, please create a directory called `ngs`. Inside `ngs`, make a directory for each assembly approach, i.e. `nanopore`, `illumina`, `hybrid`. +The scripts here, include the assembly as well as the annotation step. + + * Copy the following datasets **Illumina** @@ -96,9 +95,6 @@ Submit for each platform the respective assembly script. # copy all scripts cp /shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore_scripts/*.sh /data/$USER/ngs/nanopore/ - - - ``` **Hybrid**