From 0cf5ce390f99bc4ae818c355838096bb42488fcd Mon Sep 17 00:00:00 2001
From: Fanny Wegner <fwegner@imm.uzh.ch>
Date: Wed, 29 Mar 2023 22:21:21 +0200
Subject: [PATCH] Replace phylo_exercise.md
---
exercises/phylo_exercise.md | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/exercises/phylo_exercise.md b/exercises/phylo_exercise.md
index 1c7626a..89d36f2 100644
--- a/exercises/phylo_exercise.md
+++ b/exercises/phylo_exercise.md
@@ -22,7 +22,7 @@
- specification of results folder (will be generated by `snippy`)
- Here, we are mostly interested in analysing the samples associated with the outbreak:
+ Perhaps: Here, we are mostly interested in analysing the samples that we know from cgMLST are associated with the outbreak:
SaH1P10622<br>
SaH1P30922<br>
@@ -166,7 +166,7 @@
You can find more info on the implemented models here: http://www.iqtree.org/doc/Substitution-Models#dna-models
-* Inspect the phylogeny using **Figtree** - download it from here if you have not already done so. You should be able to open the .tre file directly via the SFTP feature of your terminal client.
+* Inspect the phylogeny using **Figtree** - download it from https://github.com/rambaut/figtree/releases if you have not already done so. You should be able to open the .tre file directly via the SFTP feature of your terminal client.
* When opening the .tre file, Figtree will ask you to give a label to the node values. These are your bootstrap values. You can choose display them under "Node Labels".
--
GitLab