diff --git a/exercises/phylo_exercise.md b/exercises/phylo_exercise.md index 1c7626ad19fb19e14f69e1f2ad8841871da22dbb..89d36f20a4406e174ee2a13b5526866efdab5d7b 100644 --- a/exercises/phylo_exercise.md +++ b/exercises/phylo_exercise.md @@ -22,7 +22,7 @@ - specification of results folder (will be generated by `snippy`) - Here, we are mostly interested in analysing the samples associated with the outbreak: + Perhaps: Here, we are mostly interested in analysing the samples that we know from cgMLST are associated with the outbreak: SaH1P10622<br> SaH1P30922<br> @@ -166,7 +166,7 @@ You can find more info on the implemented models here: http://www.iqtree.org/doc/Substitution-Models#dna-models -* Inspect the phylogeny using **Figtree** - download it from here if you have not already done so. You should be able to open the .tre file directly via the SFTP feature of your terminal client. +* Inspect the phylogeny using **Figtree** - download it from https://github.com/rambaut/figtree/releases if you have not already done so. You should be able to open the .tre file directly via the SFTP feature of your terminal client. * When opening the .tre file, Figtree will ask you to give a label to the node values. These are your bootstrap values. You can choose display them under "Node Labels".