diff --git a/exercises/qc_exercise.md b/exercises/qc_exercise.md new file mode 100644 index 0000000000000000000000000000000000000000..62be9ed6b6b64f780ffdf8ee2b5a989e449b6c24 --- /dev/null +++ b/exercises/qc_exercise.md @@ -0,0 +1,23 @@ +# Quality Control (QC) Exercises + +This document has the path for the sequencing data to be copied for the exercises. + +## Absolute path for raw data and files + +/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_mrsa - raw fastq files for mrsa from illumina + +/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/illumina/01_data_upec/ - raw fastq files for upec from illumina + +/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/rawdata_mrsa/ - raw fastq files for mrsa from nanopore + +/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/rawdata_upec/ - raw fastq files foe upec from nanopore + +/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/sequencing_summary_FAS74008_3919db7b_5086a1cb.txt - seq summary file for mrsa qc + +/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/sequencing_summary_FAS66307_6bec0f82_c8f87af5.txt - seq summary file for upec qc + +## Path for QC script + +/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore_scripts/nanopore_qc_nanoplot.sh + +