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Srinithi Purushothaman authoredSrinithi Purushothaman authored
qc_exercise.md 705 B
Quality Control (QC) Exercises
This document has the path for the sequencing summary files to be copied for the exercises.
Absolute path for sequencing summary files
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group1_mrsa/sequencing_summary_FAS74008_3919db7b_5086a1cb.txt - seq summary file for mrsa qc
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore/Group2_upec/sequencing_summary_FAS66307_6bec0f82_c8f87af5.txt - seq summary file for upec qc
Path for QC script
/shares/amr.imm.uzh/data/projects/Blockcourse_BIO296/FS2023/Participants_data/nanopore_scripts/nanopore_qc_nanoplot.sh - Nanoplot script